View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_low_11 (Length: 351)
Name: NF20079_low_11
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 43661424 - 43661293
Alignment:
| Q |
18 |
acctgagagaatcacaatcctataatcgatttagctgaacaattgtatccacttaattagtaacttaat-------gattgaaccttatttaatgtgact |
110 |
Q |
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| T |
43661424 |
acctgagagaatcacaatcctataatccatttagctgaacaattgtacctacttaattagtaacttaatttcacatgattgaaccttatttaatgtgact |
43661325 |
T |
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| Q |
111 |
tattgatcaattgcgatcacatatgcaaggtt |
142 |
Q |
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| T |
43661324 |
tattgatcaattgcgatcacatatgcaaggtt |
43661293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 234 - 341
Target Start/End: Complemental strand, 43661141 - 43661036
Alignment:
| Q |
234 |
ataaaaccatgcacattttcaatttagttatgaattataatatattgtaaagtttaatttgatgatgctggacacaataacccttttagagcatgacaca |
333 |
Q |
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| T |
43661141 |
ataaaaccatgcacatttttaatttagttatgaatta--atatattgtaaagtttaatttgatgatgctggacacaataacccttttagagcatgacaca |
43661044 |
T |
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| Q |
334 |
tccctttg |
341 |
Q |
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| T |
43661043 |
tccctttg |
43661036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 1704613 - 1704653
Alignment:
| Q |
173 |
caatacataatttaatacaattgccattcaaactcttatac |
213 |
Q |
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| T |
1704613 |
caatacataattaaaaacaattgccattcaaactcttatac |
1704653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 1700195 - 1700234
Alignment:
| Q |
173 |
caatacataatttaatacaattgccattcaaactcttata |
212 |
Q |
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| T |
1700195 |
caatacataattaaaaacaattgccattcaaactcttata |
1700234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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