View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_low_12 (Length: 338)
Name: NF20079_low_12
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 328
Target Start/End: Original strand, 34079536 - 34079849
Alignment:
| Q |
15 |
accaacaaccagtttgaggagcctgatcaaccaacacaaagcgtcgaagaaatcatgcagatcatcgccgaggccacggttcctgcagcaggaacacaga |
114 |
Q |
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| T |
34079536 |
accaacaaccagtttgaggagcctgatcaaccaacacaaagcgtcgaagaaatcatgcagatcatcgccgaggccacggttcctgcagcaggaacacaga |
34079635 |
T |
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| Q |
115 |
gcctcaacccgtaccttactggtagtttggatattgatgatgacatggaggaggatttagacactgatcctgatcttgacattgatagcagtggagaaat |
214 |
Q |
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| T |
34079636 |
gcctcaacccgtaccttactggtagtttggatattgatgatgacatggaggaggatttagacactgatcctgatcttgacattgatagcagtggagaaat |
34079735 |
T |
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| Q |
215 |
agtttatgctatgtaagctgggtaaaggatatgtgatagaattttccttgatccattctgcttgtatttatgtcctattcatcatgatcttaatttatgt |
314 |
Q |
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| T |
34079736 |
agtttatgctatgtaagctgggtaaaggatatgtgatagaattttccttgatccattctgcttgtatttatgtcctattcatcatgatcttaatttatgt |
34079835 |
T |
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| Q |
315 |
tgctttgtattcat |
328 |
Q |
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| T |
34079836 |
tgctttgtattcat |
34079849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 12311035 - 12311140
Alignment:
| Q |
129 |
cttactggtagtttggatattgatgatgacatggaggaggatttagacactgatcctgatcttgacattgatagcagtggagaaatagtttatgctatgt |
228 |
Q |
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| T |
12311035 |
cttactggtagcttggacatcgatgacgaaatggacgaggatatagatactgatcccgatcttgatatcgatagcagtggtgaaatagtatatgcaatgt |
12311134 |
T |
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| Q |
229 |
aagctg |
234 |
Q |
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| T |
12311135 |
aagctg |
12311140 |
T |
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