View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_low_14 (Length: 317)
Name: NF20079_low_14
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 31794443 - 31794739
Alignment:
| Q |
13 |
aaaataagttgtagtccctatataggagaatgctcacgaatgttatgatacaaacaatgtttaagataaaaccatgtttattagtttt-catattaataa |
111 |
Q |
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| T |
31794443 |
aaaataagttgtagtccctatataggagaatgctcacgaatgttatgataaaaacaatgtttaagataaaaccatgtttattaatttttcatattaataa |
31794542 |
T |
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| Q |
112 |
atataaaaacaatgttatgatacaaaagtaaatccaatcatcaatagattttaaggatgtgagcttctccttcatacatataaacccaaaattatgattn |
211 |
Q |
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| T |
31794543 |
atataaaaacaatgttatgatacaaaagtaaatccaatcatcaatagattttaaggatgtgagcttctccttcatacatataaacccaaaattatgatta |
31794642 |
T |
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| Q |
212 |
nnnnnncaaattcaa--------ttaagcatctaccaagataaagatttttgctaaactagttaatcaaggaaaatacaattactgaagtgagtcgt |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31794643 |
aaaaaacaaattcaattaaggatttaagcatctaccaagataaagattttttctaaactagttaatcaaggaaattacaattactgaagtgagtcgt |
31794739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 31805169 - 31805258
Alignment:
| Q |
106 |
taataaatataaaaacaatgttatgatacaaaagtaaatccaatcatcaatagattttaaggatgtgagcttctccttcatacatataaa |
195 |
Q |
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|||| ||| ||||| ||||||||||||| | | |||||||||||||||| | | |||||| |||| ||||||| || ||||||||||| |
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| T |
31805169 |
taattaatgtaaaagcaatgttatgatagagagataaatccaatcatcaaaaaaatttaagcatgtatgcttctctttaatacatataaa |
31805258 |
T |
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