View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_low_16 (Length: 285)
Name: NF20079_low_16
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 35448957 - 35448707
Alignment:
| Q |
17 |
tttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatctataataatggtggatcatcatttcgtatggttg |
116 |
Q |
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| T |
35448957 |
tttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatctatagtaatggtggatcatcatttcatatggttg |
35448858 |
T |
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| Q |
117 |
agatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtacaacc |
216 |
Q |
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| T |
35448857 |
agatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtacaacc |
35448758 |
T |
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| Q |
217 |
tgaatattcaagttttcctcacatgtctggtgctgatagaaatgccgtgga |
267 |
Q |
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| T |
35448757 |
tgaatattcaagttttcctcacatgtctggtgctgatagaaatgccgtgga |
35448707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 35449188 - 35448972
Alignment:
| Q |
17 |
tttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatctataataatggt---ggatcatcatttcgtatgg |
113 |
Q |
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| T |
35449188 |
tttggtattgatgaaaatgtcctggaggcctgcccaattgtcggcaatacatcagctacgccaatctttaataacggtactggatcaccatttcgtatgg |
35449089 |
T |
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| Q |
114 |
ttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtaca |
213 |
Q |
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| T |
35449088 |
ttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccataacaga |
35448989 |
T |
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| Q |
214 |
acctgaatattcaagtt |
230 |
Q |
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| T |
35448988 |
acctgaatatccaagtt |
35448972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 258
Target Start/End: Complemental strand, 35441087 - 35440921
Alignment:
| Q |
95 |
ggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatg |
194 |
Q |
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| T |
35441087 |
ggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgggtatgcaacaaggagttaatg |
35440988 |
T |
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| Q |
195 |
ggcagatggccatagtacaacctgaatattcaagttt---tcctcacatgtctggtgctgatagaaa |
258 |
Q |
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| T |
35440987 |
ggggaatgaccatatccaaacctgataattcaagtttttctcctcacatgtttggtgctgatggaaa |
35440921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 35449347 - 35449239
Alignment:
| Q |
86 |
aataatggtggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaag |
185 |
Q |
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| T |
35449347 |
aataatggtggatcatcgtttggtatggttgacgtgtctgctcaaggagattgttcaaccatgcattatagtcagaacacgaacatgggctttcaacaag |
35449248 |
T |
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| Q |
186 |
gagttaatg |
194 |
Q |
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|| |||||| |
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| T |
35449247 |
gaattaatg |
35449239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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