View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_low_19 (Length: 281)
Name: NF20079_low_19
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 44742528 - 44742767
Alignment:
| Q |
1 |
aaaatgttggaataaaaaattgtattgtcttgggtataacccaaactcataattcagagtaaatcnnnnnnnnnnnnnn-aaaccatttaaattacnnnn |
99 |
Q |
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| T |
44742528 |
aaaatgttggaataaaaaattgtattgtcttgggtgtaacccaaactcataattcagagtaaatctttttttttttttttaaaccatttaaattactttt |
44742627 |
T |
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| Q |
100 |
nnnaaatgtgatcttaacacttaccattataactagccttttggtacaaaaataaaaatgattcctaaatccaaacaattagcatttctgattaaacatt |
199 |
Q |
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| T |
44742628 |
tttaaatgtgatcttaacacttaccattataactagccttttggtacaaaaataaaaatgattcctaaatccaaacaattagcatttctga--------- |
44742718 |
T |
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| Q |
200 |
taccttacaataactacgcacattccctttgattcaccatttttaccaaaaaa |
252 |
Q |
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| T |
44742719 |
----ttacaataactacgcacgttccctttgattcaccatttttaccaaaaaa |
44742767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 44744001 - 44744070
Alignment:
| Q |
173 |
aacaattagcatttctgattaaacatttaccttacaataactacgcacattccctttgattcaccatttt |
242 |
Q |
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| T |
44744001 |
aacaattagcatttctgattaaacatttaccttataataactacaaacattccctttaattcaccatttt |
44744070 |
T |
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