View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_low_20 (Length: 279)
Name: NF20079_low_20
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 51707248 - 51706990
Alignment:
| Q |
1 |
tgcatcaatacaaggtgtttcttcaatccaagcatcataagaagaaatagaaaatgtatattttgctaaatagtgagcaacttgattagcttctattgta |
100 |
Q |
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| T |
51707248 |
tgcatcaatacaaggtgtttcttcaatccaagcatcataagaagaaatagaaaatgtatattttgctaaatagtgagcaacttgattagcttctactgta |
51707149 |
T |
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| Q |
101 |
ccgaattttttggcactccaacgattgcacctaaagtatgatgcacgttgctgaatatcatcatgatattttgaaaggaatgacaaaaaggaaattggta |
200 |
Q |
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| T |
51707148 |
acgaattttttggcactccaacgattgcacctaaagtatgatgcacgttgctgaatatcatcatgatattttgaaaggaatgacaaaaaggaaattggta |
51707049 |
T |
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| Q |
201 |
acctataatttatacctaacgtcaaaacaattgaagaaagagcttcaataattatgtgg |
259 |
Q |
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| T |
51707048 |
acctataatttatacctaacgtcaaaacaattgaagaaagagcttcaataattatgtgg |
51706990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 662796 - 662714
Alignment:
| Q |
12 |
aaggtgtttcttcaatccaagcatcataagaagaaatagaaaatgtatattttgctaaatagtgagcaacttgattagcttct |
94 |
Q |
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| T |
662796 |
aaggcgtttctttaatccaaataacatcagaagaaatagaaaatacatattttgctaaatagtgtggagcttgattagcttct |
662714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 19119648 - 19119741
Alignment:
| Q |
1 |
tgcatcaatacaaggtgtttcttcaatccaagcatcataagaagaaatagaaaatgtatattttgctaaatagtgagcaacttgattagcttct |
94 |
Q |
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| T |
19119648 |
tgcatctatacaaggtatttcttcaatccaagcaacatcggaataaatagagattgcatgtttttctaaatagtggccagcttgattagcttct |
19119741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 4523899 - 4523818
Alignment:
| Q |
12 |
aaggtgtttcttcaatccaagcatcataagaagaaatagaaaatgtatattttgctaaatagtgagcaacttgattagcttct |
94 |
Q |
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| T |
4523899 |
aaggtgtttattcaatccaaacaacaacaaaa-aaataaaaattgcatattttgcaaaatagtgagcagcttgattagcttct |
4523818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 47488831 - 47488913
Alignment:
| Q |
12 |
aaggtgtttcttcaatccaagcatcataagaagaaatagaaaatgtatattttgctaaatagtgagcaacttgattagcttct |
94 |
Q |
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||||| ||| |||||||||| ||||||||||||||||||||| || | |||||| |||| | | |||| ||||||||||||| |
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| T |
47488831 |
aaggtattttttcaatccaaacatcataagaagaaatagaaattgcacattttgttaaacatttagcagtttgattagcttct |
47488913 |
T |
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