View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_low_23 (Length: 245)
Name: NF20079_low_23
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 38949323 - 38949120
Alignment:
| Q |
25 |
ggagtccaaggtattccaatcaaattacaacaatgtaaaagagaaaatcaactcttcggattagggtcgtcttcgtttataagcatttctcaaaagatat |
124 |
Q |
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| T |
38949323 |
ggagtccaaggtattccaatcaaattacaacaatgtaaaagagaaaaccaactcttcggattagggtcgtcttcatttataagcatttctcaaaagatat |
38949224 |
T |
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| Q |
125 |
atnnnnnnnnntcataaaataattaatagtggtggttactccacttgaagaaccccacctagaacaaggaaggaactacgcaacgatatacctttcgtac |
224 |
Q |
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| T |
38949223 |
atataaaaaatt-ataaaataattaatagtggtggttactccacttgaagaaccccacctagaacaaggaaggaactacgcaacgatatatctttcgtac |
38949125 |
T |
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| Q |
225 |
tacat |
229 |
Q |
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||||| |
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| T |
38949124 |
tacat |
38949120 |
T |
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