View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20079_low_25 (Length: 242)

Name: NF20079_low_25
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20079_low_25
NF20079_low_25
[»] chr4 (4 HSPs)
chr4 (1-241)||(30775419-30775655)
chr4 (2-193)||(35132616-35132807)
chr4 (1-192)||(9335701-9335892)
chr4 (66-192)||(23596395-23596521)
[»] chr7 (29 HSPs)
chr7 (1-232)||(8628699-8628926)
chr7 (1-241)||(8585471-8585707)
chr7 (1-193)||(13333265-13333457)
chr7 (2-193)||(8602142-8602333)
chr7 (1-192)||(8659530-8659721)
chr7 (1-186)||(17268106-17268291)
chr7 (1-192)||(8382686-8382877)
chr7 (64-193)||(6789742-6789871)
chr7 (1-193)||(8667586-8667778)
chr7 (1-193)||(10494183-10494375)
chr7 (1-189)||(17260408-17260596)
chr7 (1-189)||(8570478-8570666)
chr7 (1-189)||(8581867-8582055)
chr7 (1-193)||(8654617-8654809)
chr7 (64-189)||(3147502-3147627)
chr7 (1-193)||(8576493-8576685)
chr7 (2-189)||(8538204-8538391)
chr7 (14-193)||(8636152-8636331)
chr7 (1-192)||(27830685-27830876)
chr7 (1-193)||(8610084-8610276)
chr7 (1-193)||(1301627-1301823)
chr7 (64-192)||(8671440-8671568)
chr7 (2-189)||(8559501-8559688)
chr7 (64-193)||(7877542-7877671)
chr7 (83-189)||(8102916-8103022)
chr7 (124-193)||(8647167-8647236)
chr7 (71-186)||(8017229-8017344)
chr7 (155-192)||(29581651-29581688)
chr7 (66-151)||(39985878-39985963)
[»] chr2 (10 HSPs)
chr2 (1-232)||(16661766-16661993)
chr2 (1-193)||(16657326-16657518)
chr2 (1-211)||(7542393-7542599)
chr2 (5-189)||(12245219-12245403)
chr2 (1-192)||(12234856-12235047)
chr2 (5-192)||(14703579-14703766)
chr2 (4-186)||(11999564-11999746)
chr2 (77-149)||(17716546-17716618)
chr2 (1-44)||(12258539-12258582)
chr2 (121-192)||(43625699-43625770)
[»] chr1 (3 HSPs)
chr1 (1-232)||(34466567-34466794)
chr1 (1-192)||(15595201-15595399)
chr1 (1-193)||(4678367-4678559)
[»] chr8 (2 HSPs)
chr8 (64-193)||(43745079-43745206)
chr8 (77-192)||(12528747-12528862)
[»] chr5 (1 HSPs)
chr5 (76-193)||(28220193-28220310)
[»] chr6 (7 HSPs)
chr6 (63-184)||(28910811-28910932)
chr6 (77-150)||(11276197-11276270)
chr6 (71-138)||(11156507-11156574)
chr6 (71-150)||(11170807-11170886)
chr6 (71-138)||(11196960-11197027)
chr6 (71-150)||(11200125-11200204)
chr6 (77-150)||(11209635-11209708)
[»] scaffold1207 (1 HSPs)
scaffold1207 (77-150)||(1128-1201)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 30775419 - 30775655
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30775419 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 30775518  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcacatacagtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||    
T  30775519 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggc----acagtg 30775614  T
Q  201 acaactgcatttttaactggggattccaaatacatctctgc 241  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  30775615 ataactgcatttttaactggggattccaaatacatctctgc 30775655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 35132616 - 35132807
Alignment:
Q  2 acatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtgg 101  Q
    ||||||||||| |||||||||||||| ||||||||||||||    ||  || ||||   |  |||||| ||||| ||||||||||  ||||| ||||| |    
T  35132616 acatcaaaagtgccaccaccaagatcgaagacaaaaatattttgttctccagcacaatcagatctcttgtcaaggccatatgcaaccgctgcggcagtag 35132715  T
Q  102 gctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    | ||||| |||| ||||||||||||  |||||||||| ||||||||||| |||||||||||||| || | |||| | |||||||||||||||    
T  35132716 gttcattcattactctcataacattgggaccagcaatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcaca 35132807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 9335892 - 9335701
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| || ||||| |||||||||||||||||||| |  | | |||||||   |  |||||| ||||| ||||||||||||||||| |||||     
T  9335892 cacatcaaaagtaccgccacccagatcaaagacaaaaatatttcggttaccatcacagtcatttctcttatcaaggccatatgcaatagctgcagcagta 9335793  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcac 192  Q
    || ||||| ||||| |  || |||||||| |||||||| | ||||||||| || ||||| |||||||| | ||||||||| ||||| |||||    
T  9335792 ggttcattgattatccgaatgacattaaggccagcaatagtaccagcatctatggtggcctttcgctgagaatcattgaagtaagctggcac 9335701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 23596521 - 23596395
Alignment:
Q  66 tcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcg 165  Q
    |||| ||||| ||||| |||||||| || ||||||||||| ||||| |||||||| ||||| || |||| |||| ||||||||||| |||| ||||  ||    
T  23596521 tcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtccagaaatgacaccagcatccttagtagcttgacg 23596422  T
Q  166 ctgtgcatcattgaaataagcaggcac 192  Q
     |||| ||| ||||| || ||||||||    
T  23596421 ttgtgaatcgttgaagtatgcaggcac 23596395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 8628699 - 8628926
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||||||||||||||||||||| ||||||||||| |  ||| |||||||||||||| | || ||||| ||||||||||||||||| ||||||    
T  8628699 cacatcaaaagtcccaccaccaagatcaaacacaaaaatatttcgttcaccatcacacctacctttgttgtcaaggccatatgcaatagctgcagcagtg 8628798  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcacatacagtg 200  Q
    || ||||| ||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||     |||    
T  8628799 gggtcattgattatcctcataacattaaggccagcaatggcaccagcattcatggtggcttttcgctgagaatcattgaaataagcaggcacg----gtg 8628894  T
Q  201 acaactgcatttttaactggggattccaaata 232  Q
    |||||||||||||| || || |||| ||||||    
T  8628895 acaactgcattttttacaggtgatttcaaata 8628926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8585707 - 8585471
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||||||||||||||||||||| ||||||||||| |  ||| |||||||  ||||| | || ||||| ||||||||||||||||| ||||||    
T  8585707 cacatcaaaagtcccaccaccaagatcaaacacaaaaatatttcgttcaccatcacagttacctttgttgtcaaggccatatgcaatagctgcagcagtg 8585608  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcacatacagtg 200  Q
    || ||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||    |||||     
T  8585607 ggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcattgaaataagcaggc----acagtc 8585512  T
Q  201 acaactgcatttttaactggggattccaaatacatctctgc 241  Q
    ||||||||||||| ||| || |||| ||||||  |||||||    
T  8585511 acaactgcattttgaacaggtgatttcaaatatgtctctgc 8585471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 13333457 - 13333265
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| |||||||| |||||||||||||||||||| | || | |||||||   || |||||| ||||| ||||||||||||||||| |||||     
T  13333457 cacatcaaaagtaccaccacccagatcaaagacaaaaatatttcgcttaccatcacaatcacgtctcttgtcaaggccatatgcaatagctgcagcagta 13333358  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    || ||||| |||||||  || | |||||| |||||||| ||||||||||| || ||||| |||||||| | ||||||||| ||||| ||||||    
T  13333357 ggttcattgattattcgaatgatattaaggccagcaatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcaca 13333265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 8602142 - 8602333
Alignment:
Q  2 acatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtgg 101  Q
    ||||||||||| ||||||||||||||||| |  |||||||| |||||  || ||||  || ||||||| | ||| |||||||||| ||| |||||||| |    
T  8602142 acatcaaaagttccaccaccaagatcaaatatgaaaatatttctctcttcaacacaattagctctcttttgaaggccatatgcaagagcagctgcagttg 8602241  T
Q  102 gctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    ||||||| ||||| | ||| ||||| |||||||||||||||||||||||  | |||||||||||||| | |||||| |||||||| ||||||    
T  8602242 gctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccggcaca 8602333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 8659530 - 8659721
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| |||||||||||||||||||| ||||||||    | | |||||||   ||||||||| ||||  ||||||||||||||||| |||||     
T  8659530 cacatcaaaagtaccaccaccaagatcaaagaccaaaatattttgtttaccatcacagtcacctctcttgtcaaaaccatatgcaatagctgcagcagta 8659629  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcac 192  Q
    || |||||||||||    || |||||||| |||||||||||||| | ||| || |||||||||||||| | ||||||||| || ||||||||    
T  8659630 ggttcattaattatctgaatgacattaaggccagcaatggcaccggaatctatggtggcttttcgctgagaatcattgaactatgcaggcac 8659721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 17268106 - 17268291
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||  || ||||  ||  ||||||  |||| ||||||||||||||||| |||||     
T  17268106 cacatcaaaagtcccaccaccaaggtcaaagacaaaaatattccgttcttcaacacagttagttctcttgccaaggccatatgcaatagctgcagcagtt 17268205  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagc 186  Q
    || ||||| ||||   |||  |||||||| ||||||||| |||||||||| || |||||||||||||| | ||| ||||| |||||    
T  17268206 ggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgagaatcgttgaagtaagc 17268291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8382877 - 8382686
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| |||||||||||||||||||  |||||||| |||||  ||  |||  || ||||||||| ||| |||||||||| ||| || |||||     
T  8382877 cacatcaaaagttccaccaccaagatcaaagatgaaaatatttctctcttcaagacaattagctctcttctgaaggccatatgcaagagcagcggcagtt 8382778  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcac 192  Q
    |||||||| ||||| | ||| ||||| || |||||||| |||||||||||  | |||||||| || || | |||||||||||| ||||||||    
T  8382777 ggctcattgattatccgcattacattgaggccagcaatcgcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcac 8382686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 6789742 - 6789871
Alignment:
Q  64 tctcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggctttt 163  Q
    |||||| ||||| |||||||||| ||| || || || || ||||| |||||||  |||||||||||||||||||||||||||||||| | |||||||||     
T  6789742 tctcttatcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggctttc 6789841  T
Q  164 cgctgtgcatcattgaaataagcaggcaca 193  Q
    || || | ||||||||||||||||||||||    
T  6789842 cgttgagaatcattgaaataagcaggcaca 6789871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 8667586 - 8667778
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    ||||||||||||||| ||||| |||||||||||||||||||| |    | |||||||   |  |||||| ||||| ||||||||||||||||| |||||     
T  8667586 cacatcaaaagtcccgccacccagatcaaagacaaaaatatttcggctaccatcacagtcatttctcttgtcaaggccatatgcaatagctgccgcagta 8667685  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    || ||||| ||||| |  || |||||||| |||||||| | ||||||||| || ||||| |||||||| | ||||||||| ||||| ||||||    
T  8667686 ggttcattgattatccgaatgacattaagtccagcaatagtaccagcatctatggtggcctttcgctgagaatcattgaagtaagctggcaca 8667778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 10494375 - 10494183
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| |||||||| |||||||||||||||||||| |  | | | |||||   || |||||| ||||| ||||||||||||||||| |||||     
T  10494375 cacatcaaaagtaccaccacccagatcaaagacaaaaatatttcggttaccctcacaatcacttctcttgtcaaggccatatgcaatagctgcagcagta 10494276  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    || ||||| ||||| |  || |||||||| |||||||| ||||||||||| ||||| || ||||| || | ||| ||||| ||||| ||||||    
T  10494275 ggttcattgattatccgaatgacattaaggccagcaatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcaca 10494183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 17260408 - 17260596
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||||   |   | ||||  ||  ||||||  |||| ||||||||||||||||| ||| |     
T  17260408 cacatcaaaagtccccccaccaaggtcaaagacaaaaatattccgtacttaaacacaattagttctcttgacaaggccatatgcaatagctgcagcaata 17260507  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcagg 189  Q
    || ||||||||||   ||| ||||| ||| ||||||||  |||||||||| || |||||||||||||| | ||||||||||||||||||    
T  17260508 ggttcattaattaacttcaaaacataaaggccagcaataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcagg 17260596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 8570478 - 8570666
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| ||||| ||||| ||||||| ||||||||| |||| | || || |  || ||||||| | ||| |||||||||| |||||| |||||     
T  8570478 cacatcaaaagttccaccgccaaggtcaaagataaaaatatttctcttatcaacaaaattagctctcttttgaaggccatatgcaagagctgccgcagtc 8570577  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcagg 189  Q
    || ||||| ||||| | ||| ||||| |||||||||||  |||| |||||  |||||||| |||| |||| |||||| |||||||||||    
T  8570578 ggttcattgattatccgcattacattgagaccagcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcagg 8570666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 8581867 - 8582055
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| ||||| ||||| ||||||| ||||||||| |||| | || ||||  || ||||||| | ||| |||||||||| |||||| |||||     
T  8581867 cacatcaaaagttccacctccaaggtcaaagataaaaatatttctcttatcaacacaattagctctcttttgaaggccatatgcaagagctgccgcagtc 8581966  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcagg 189  Q
    || ||||| ||||| | ||| ||||| ||||| |||||  |||| |||||  |||||||| |||| |||| |||||| |||||||||||    
T  8581967 ggttcattgattatccgcattacattgagacctgcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcagg 8582055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 8654617 - 8654809
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| ||||||||||||||||| || ||||||||||  | | ||||| |  ||| || ||| ||||| ||||||||||||||||| |||||     
T  8654617 cacatcaaaagtaccaccaccaagatcaaataccaaaatattccgtttaccatcatagttacttcgcttgtcaaggccatatgcaatagctgcggcagta 8654716  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    || ||||| | ||| |  || || ||||| |||||||||||||||||||| || || ||||||||||| |  |||||||| || || ||||||    
T  8654717 ggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatctatggttgcttttcgctgagagtcattgaagtatgccggcaca 8654809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 3147502 - 3147627
Alignment:
Q  64 tctcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggctttt 163  Q
    |||||| || |||||||| ||||||||||| ||||| || ||||| ||||| | ||||| |||||| ||||||||  |||||||||| || || |||||     
T  3147502 tctcttgtccagtccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatctattgtcgctttc 3147601  T
Q  164 cgctgtgcatcattgaaataagcagg 189  Q
    ||||| ||||||||||||||||||||    
T  3147602 cgctgagcatcattgaaataagcagg 3147627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 8576493 - 8576685
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| ||||| ||||| ||||||| ||||||||| || | | || ||||  || ||||||| | ||| ||||| |||| |||||| |||||     
T  8576493 cacatcaaaagttccaccgccaaggtcaaagataaaaatatttcttttatcaacacaattagctctcttttgaaggccatacgcaagagctgccgcagtc 8576592  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    || ||||| |||||   ||| ||||| ||||||||||| ||||| |||||  |||||||| |||| || | |||||| |||||||||||||||    
T  8576593 ggttcattgattatctgcatgacattgagaccagcaattgcacctgcatctttagtggctcttcgttgggaatcattaaaataagcaggcaca 8576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 8538204 - 8538391
Alignment:
Q  2 acatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtgg 101  Q
    ||||||||||| |||||||||||||||||||  ||||  || |||||  || ||||  || ||||||| | ||| || ||||||| ||| || || || |    
T  8538204 acatcaaaagttccaccaccaagatcaaagatgaaaacttttctctcttcaacacaattagctctcttttgaaggccgtatgcaagagcagcagctgtag 8538303  T
Q  102 gctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcagg 189  Q
    | ||||| ||||| | ||| ||||| || ||||||||| ||||||||||  | |||||| ||||||||| ||||||||||||||||||    
T  8538304 gttcattgattatccgcattacattgaggccagcaatgacaccagcatctttggtggctcttcgctgtgaatcattgaaataagcagg 8538391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 8636331 - 8636152
Alignment:
Q  14 ccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtgggctcattaatta 113  Q
    ||||||||||||||||| || ||||| || |||||   | ||||  |||||||||| | ||||||||| |||| |||||| ||||| || ||||| ||||    
T  8636331 ccaccaccaagatcaaatacgaaaatgtttctctctttaacacagttacctctcttttgaagtccatacgcaaaagctgcagcagttggttcattgatta 8636232  T
Q  114 ttctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    | |  || |||||||| || |||||||||||||||||  | |||| ||| ||||| | ||||||||||||||| ||||||    
T  8636231 tccgaattacattaaggccggcaatggcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcaca 8636152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 27830876 - 27830685
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||||||||||||||| ||||| |||||||||||||  ||  ||  | |  |   || | | ||||| ||||||||||||||||| |||||     
T  27830876 cacatcaaaagtcccaccaccaaggtcaaacacaaaaatattccgttctccagtatattttgttcccgtgtcaaggccatatgcaatagctgcagcagta 27830777  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcac 192  Q
    |||||  | ||||| | |||||||||||| |||||||||||||| | ||| | |||||||||||| || |  |||||||||||||| |||||    
T  27830776 ggctcgcttattatccgcataacattaaggccagcaatggcaccggaatctacagtggcttttcgttgagagtcattgaaataagctggcac 27830685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 8610084 - 8610276
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||| ||||||||||||||||||||||||| ||||||||| || |   |  ||||  || ||||||||| ||| |||||||||| ||| || || ||     
T  8610084 cacatcgaaagtcccaccaccaagatcaaagataaaaatatttctattttccacacaattagctctcttctgaagaccatatgcaagagccgcagccgtt 8610183  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    || ||||| || || |  || |||||||| |||| |||| ||||||||||  | |||||||| ||||| | |||||| |||||||||||||||    
T  8610184 ggttcattgataatccggattacattaaggccagaaatgacaccagcatcttttgtggctttccgctgagaatcattaaaataagcaggcaca 8610276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 1301627 - 1301823
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| ||||| ||||| |||||||| ||||||||||  | | |||||||   || |||||| ||||  ||||| ||||||||||| |||||     
T  1301627 cacatcaaaagtaccaccgccaaggtcaaagaccaaaatattccgtttaccatcacagtcacttctcttgtcaaaaccatacgcaatagctgcagcagta 1301726  T
Q  101 g----gctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    |    | |||||||||||    || |||||||| |||||||| ||||| ||||| || |||||||||||||| | |||||||||||  |||||||||    
T  1301727 gctaggttcattaattatctgaatgacattaaggccagcaattgcaccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcaca 1301823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 8671568 - 8671440
Alignment:
Q  64 tctcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggctttt 163  Q
    |||||| ||||| ||||||||||||||||| ||||| || ||||| ||||| |  || |||||||| |||||||| | ||||||||| || |||||  ||    
T  8671568 tctcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatcaatggtggccgtt 8671469  T
Q  164 cgctgtgcatcattgaaataagcaggcac 192  Q
    ||||| | ||||||||| ||||| |||||    
T  8671468 cgctgagaatcattgaagtaagctggcac 8671440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 8559501 - 8559688
Alignment:
Q  2 acatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtgg 101  Q
    ||||||||||| |||||||| ||||||||||  |||||||| |||||   | ||||  ||  |||||| | |||||||||||||| ||| |||||||| |    
T  8559501 acatcaaaagttccaccaccgagatcaaagatgaaaatatttctctctttaacacaattagatctcttttgaagtccatatgcaagagcagctgcagttg 8559600  T
Q  102 gctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcagg 189  Q
    | ||||| |||||   ||| |||||||||||||||||  |||| |||||  | |||||| |||  || | |||||| |||||||||||    
T  8559601 gttcattgattatctgcattacattaagaccagcaatttcacctgcatctttggtggctcttctttgagaatcattaaaataagcagg 8559688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 7877671 - 7877542
Alignment:
Q  64 tctcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggctttt 163  Q
    |||||| | ||| ||||||||||  || || ||||| || ||||||||||| | ||||||||| || || ||||  |||||||||||  | |||||||||    
T  7877671 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatcttttgtggctttt 7877572  T
Q  164 cgctgtgcatcattgaaataagcaggcaca 193  Q
    || || | ||||||||||||||| ||||||    
T  7877571 cgttgagaatcattgaaataagccggcaca 7877542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 8102916 - 8103022
Alignment:
Q  83 gcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaat 182  Q
    |||||||| || ||||| ||||||||||| ||||||| |||||| | |||||| ||  ||||||||||  |||| ||||  ||||| | ||||||||| |    
T  8102916 gcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgcttgacgctgagaatcattgaagt 8103015  T
Q  183 aagcagg 189  Q
    |||||||    
T  8103016 aagcagg 8103022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 8647167 - 8647236
Alignment:
Q  124 attaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    |||||| ||||||||||| || ||||| |||||||||||||||||   ||||||||| || |||||||||    
T  8647167 attaaggccagcaatggccccggcatctatagtggcttttcgctgataatcattgaagtatgcaggcaca 8647236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 8017344 - 8017229
Alignment:
Q  71 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtg 170  Q
    |||||||| || ||||||||||| || || ||||| || || ||||||| |||||| || || |||||| |||| |||||| | |||||||  ||||| |    
T  8017344 tcaagtccgtacgcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcctgcaatgacaccggcatcctttgtggcttgacgctgcg 8017245  T
Q  171 catcattgaaataagc 186  Q
     ||||||||| |||||    
T  8017244 aatcattgaagtaagc 8017229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 29581688 - 29581651
Alignment:
Q  155 gtggcttttcgctgtgcatcattgaaataagcaggcac 192  Q
    |||||||||||||| | |||||||||||||||||||||    
T  29581688 gtggcttttcgctgagaatcattgaaataagcaggcac 29581651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 39985878 - 39985963
Alignment:
Q  66 tcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatcc 151  Q
    |||| ||||| ||||| ||||| || || |||||||||||||| || |||| ||| ||||||||||| |||||  | |||||||||    
T  39985878 tcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatcc 39985963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 16661993 - 16661766
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| |||||||  ||| ||| || ||||| ||||||||||||||||||||||||    
T  16661993 cacatcaaaagtcccaccaccaagatcaaagacaaaaatatttctttcaccatcacaattacttcttttgtcaaggccatatgcaatagctgctgcagtg 16661894  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcacatacagtg 200  Q
    || ||||| ||||| |||| ||| ||||| ||||||||||||||||||||||| |||||||||||||| | ||| || |||||||||||     ||||||    
T  16661893 ggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcgttaaaataagcagg----aacagtg 16661798  T
Q  201 acaactgcatttttaactggggattccaaata 232  Q
    ||||||||||||||||| || |||||||||||    
T  16661797 acaactgcatttttaaccggtgattccaaata 16661766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 16657518 - 16657326
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||  | | |||||||   || |||||| ||||| ||||||||||||||||| |||||     
T  16657518 cacatcaaaagtaccaccgccaaggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaagaccatatgcaatagctgcagcagta 16657419  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    || ||||| || ||||  || |||||||| ||||| |||||||||||||| || |||||||||||||| | ||||||||| ||||| ||||||    
T  16657418 ggttcattgataattcgaatgacattaaggccagcgatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcaca 16657326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 7542393 - 7542599
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| ||||| ||||||||||| ||||||||||| | |||  ||||| |   |  |||||| ||||| |||||||||| |||||| |||||     
T  7542393 cacatcaaaagtgccaccgccaagatcaaaaacaaaaatatttcgctctccatcataatcagttctcttgtcaaggccatatgcaacagctgcggcagta 7542492  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcacatacagtg 200  Q
    || ||||| |||   ||||||||||| || |||||||||||||| ||||| |||||||||||||| || | |||||| |||||||||||    ||||||     
T  7542493 ggttcattcattgccctcataacattgaggccagcaatggcacccgcatctatagtggcttttcgttgagaatcattaaaataagcagg----tacagta 7542588  T
Q  201 acaactgcatt 211  Q
    |||||||||||    
T  7542589 acaactgcatt 7542599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 12245403 - 12245219
Alignment:
Q  5 tcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtgggct 104  Q
    |||||||| ||||||||||||||||| |||||||| || || ||  || ||||   | ||||||| ||||| |||||||||| |||||| |||||||| |    
T  12245403 tcaaaagtgccaccaccaagatcaaacacaaaaatgtttctttctccaacacaatcagctctcttttcaaggccatatgcaacagctgcagcagtgggtt 12245304  T
Q  105 cattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcagg 189  Q
    |||| ||||  ||||||||||| ||||||||||| |  |||||||| || || ||||||||||| | |||| | |||||||||||    
T  12245303 cattcattaccctcataacattgagaccagcaattgagccagcatctatcgttgcttttcgctgagaatcactaaaataagcagg 12245219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 12234856 - 12235047
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| ||||| || |||||||| ||||||||||| |  ||  || ||||   |  |||||| ||||| |||||||||| ||| |||||  ||    
T  12234856 cacatcaaaagtgccaccgccgagatcaaaaacaaaaatatttcgttctccaacacaatcagttctcttgtcaagaccatatgcaacagcggctgccatg 12234955  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcac 192  Q
    || || || ||||  ||||||||||| || ||||||||| |||||||||| ||||| |||||||| || | |||||||||||||||||||||    
T  12234956 ggttcgttcattaccctcataacattgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcac 12235047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 14703579 - 14703766
Alignment:
Q  5 tcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtgggct 104  Q
    |||||||| ||||||||||||||||||||||| ||||| |  ||  || || |   |  |||||| ||||| ||||||||||||||||| || || || |    
T  14703579 tcaaaagtaccaccaccaagatcaaagacaaatatattacgttctccaccataatcagttctcttgtcaaggccatatgcaatagctgcagctgtaggtt 14703678  T
Q  105 cattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcac 192  Q
    |||| ||||  ||||||||||| || || |||||  ||||||||||||||||||||||||  || | |||| | ||||||||||||||    
T  14703679 cattcattaccctcataacattgaggccggcaataacaccagcatccatagtggcttttctttgagaatcactaaaataagcaggcac 14703766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 11999564 - 11999746
Alignment:
Q  4 atcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtgggc 103  Q
    ||||||||| ||||| |||||||||||||| ||||| || || ||  || ||||   | ||||||| ||||| |||||||||| || ||| ||||||||     
T  11999564 atcaaaagtgccaccgccaagatcaaagactaaaatgtttctttctccaacacaatcagctctcttgtcaaggccatatgcaacagttgcagcagtgggt 11999663  T
Q  104 tcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagc 186  Q
    ||||| ||||  || |||||||| |  |||||||| ||||| ||||| |||||||||||||| || | |||| | ||||||||    
T  11999664 tcattcattacccttataacattgatgccagcaattgcaccggcatctatagtggcttttcgttgagaatcactaaaataagc 11999746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 17716618 - 17716546
Alignment:
Q  77 ccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcat 149  Q
    ||||| ||||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||    
T  17716618 ccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcat 17716546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12258582 - 12258539
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcc 44  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  12258582 cacatcaaaagtgccaccaccaagatcaaagacaaaaatattcc 12258539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 43625699 - 43625770
Alignment:
Q  121 aacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcac 192  Q
    ||||||||| ||  ||||| ||||| |||| || |||||||||||||| | ||||||||| |||||||||||    
T  43625699 aacattaaggccgacaatgacaccaacatctatggtggcttttcgctgagaatcattgaagtaagcaggcac 43625770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 34466794 - 34466567
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||||||||||||||| |||||||| |||||||| |  ||  |  || |   | ||||||| ||||||||||||||||||||||| ||||||    
T  34466794 cacatcaaaagtcccaccaccaaggtcaaagacgaaaatatttccttcttccacaaagtcagctctcttgtcaagtccatatgcaatagctgcagcagtg 34466695  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcacatacagtg 200  Q
    || ||||| ||||||  || ||||||||| |||||||| | ||||||||||| ||| ||||||||||| | |||||| ||||||||||||||     |||    
T  34466694 ggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatccacagtagcttttcgctgagaatcattaaaataagcaggcacg----gtg 34466599  T
Q  201 acaactgcatttttaactggggattccaaata 232  Q
    | ||||||||| |||| ||| |||||||||||    
T  34466598 ataactgcattcttaattggtgattccaaata 34466567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 15595201 - 15595399
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| ||||||||||||||||||||||||||||| || ||  || ||||  ||   ||||| ||||| ||||||||||||||||| || ||     
T  15595201 cacatcaaaagtgccaccaccaagatcaaagacaaaaatatttctttctccaacacagttaatcctcttgtcaaggccatatgcaatagctgcagctgtc 15595300  T
Q  101 ggct-------cattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcac 192  Q
     |||       |||| ||||  |  ||||||||||| |||||||||||||| ||||| |||||||||||||| || | |||||||| ||||||||||||    
T  15595301 agctgtcggttcattgattacccgtataacattaaggccagcaatggcacctgcatctatagtggcttttcgttgagaatcattgagataagcaggcac 15595399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 4678559 - 4678367
Alignment:
Q  1 cacatcaaaagtcccaccaccaagatcaaagacaaaaatattcctctcagcatcacacctacctctcttctcaagtccatatgcaatagctgctgcagtg 100  Q
    |||||||||||| ||||||||||| ||||||||||| ||||| |  | |  |||||    || |||||| ||||  |||||||||||||||||  ||||     
T  4678559 cacatcaaaagtaccaccaccaaggtcaaagacaaatatatttcgtttacaatcactttcacttctcttgtcaaaaccatatgcaatagctgcaacagta 4678460  T
Q  101 ggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcaca 193  Q
    || || || ||||||   || |||||||| |||||||||||||||||||| || || |||||||| || | ||||||||| || |||||||||    
T  4678459 ggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcaca 4678367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 43745079 - 43745206
Alignment:
Q  64 tctcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggctttt 163  Q
    |||||| || || ||||||||||||||||| |||||||| ||||| |||||  ||||||||| ||| ||||||||||||||||||||  ||||||||||     
T  43745079 tctcttttccagaccatatgcaatagctgcagcagtgggttcattgattatcttcataacatcaagcccagcaatggcaccagcatc--tagtggctttc 43745176  T
Q  164 cgctgtgcatcattgaaataagcaggcaca 193  Q
    |||||   ||||||||||||||| ||||||    
T  43745177 cgctgataatcattgaaataagccggcaca 43745206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 192
Target Start/End: Original strand, 12528747 - 12528862
Alignment:
Q  77 ccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcat 176  Q
    |||||||||| ||| |||||||| || || || ||||| |  || ||||| || ||||||||| ||||||||||| | ||||||  |||||| | |||||    
T  12528747 ccatatgcaagagcagctgcagttggttcgttgattatccgtattacattgaggccagcaatgacaccagcatccttggtggctcgtcgctgcgaatcat 12528846  T
Q  177 tgaaataagcaggcac 192  Q
    ||||||| || |||||    
T  12528847 tgaaatacgctggcac 12528862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 28220193 - 28220310
Alignment:
Q  76 tccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatca 175  Q
    ||||||||||||||| || |||||||| ||||| | ||| || | |||||| ||||||||||||| ||| ||||| || |||||||| |||||   ||||    
T  28220193 tccatatgcaatagcagcagcagtgggttcattgactatccttagaacatttagaccagcaatggtacctgcatctatggtggctttccgctgataatca 28220292  T
Q  176 ttgaaataagcaggcaca 193  Q
    ||||||||||||||||||    
T  28220293 ttgaaataagcaggcaca 28220310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 28910811 - 28910932
Alignment:
Q  63 ctctcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttt 162  Q
    ||||||| || || ||||||| ||||||| | |||||| ||||||| ||||| | |||||||||||| |   |||||||||||||||| || ||||||||    
T  28910811 ctctcttgtcgaggccatatgaaatagctacagcagtgagctcattgattatccgcataacattaagcctgacaatggcaccagcatctatggtggcttt 28910910  T
Q  163 tcgctgtgcatcattgaaataa 184  Q
     | ||  | |||||||||||||    
T  28910911 cctctaagaatcattgaaataa 28910932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 11276197 - 11276270
Alignment:
Q  77 ccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc 150  Q
    ||||||||||| || |||||||| |||||||| ||||||| |||||| || || |||||||| ||||| |||||    
T  11276197 ccatatgcaattgcagctgcagtaggctcatttattattcgcataacgtttaggccagcaatagcacccgcatc 11276270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 11156507 - 11156574
Alignment:
Q  71 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaat 138  Q
    ||||| ||||||||||| || |||||||  |||||||| ||||||| ||||||||| || ||||||||    
T  11156507 tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat 11156574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 11170807 - 11170886
Alignment:
Q  71 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc 150  Q
    ||||| ||||||||||| || |||||||| |||||||| | ||||| || |||||| || |||||||| ||||| |||||    
T  11170807 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatc 11170886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 11196960 - 11197027
Alignment:
Q  71 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaat 138  Q
    ||||| ||||||||||| || |||||||  |||||||| ||||||| ||||||||| || ||||||||    
T  11196960 tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat 11197027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 11200125 - 11200204
Alignment:
Q  71 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc 150  Q
    ||||| ||||||||||| || |||||||  |||||||| ||||||| || |||||| || |||||||| ||||| |||||    
T  11200125 tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagcacccgcatc 11200204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 11209635 - 11209708
Alignment:
Q  77 ccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc 150  Q
    ||||||||||| || |||||||| |||||||| | ||||| || |||||| || |||||||| ||||| |||||    
T  11209635 ccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatc 11209708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 1128 - 1201
Alignment:
Q  77 ccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc 150  Q
    ||||||||||| || |||||||| |||||||| | ||||| || |||||| || |||||||| ||||| |||||    
T  1128 ccatatgcaattgcagctgcagtaggctcattgagtattcccaaaacattgaggccagcaatagcacctgcatc 1201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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