View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20079_low_3 (Length: 481)

Name: NF20079_low_3
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20079_low_3
NF20079_low_3
[»] chr2 (5 HSPs)
chr2 (2-481)||(44741948-44742427)
chr2 (240-328)||(17303530-17303618)
chr2 (244-328)||(33050829-33050913)
chr2 (272-328)||(35658270-35658326)
chr2 (372-444)||(38002210-38002282)
[»] scaffold0042 (1 HSPs)
scaffold0042 (40-478)||(30934-31372)
[»] chr3 (9 HSPs)
chr3 (40-478)||(26373237-26373673)
chr3 (236-452)||(9192194-9192412)
chr3 (236-328)||(30499007-30499099)
chr3 (240-320)||(557578-557658)
chr3 (242-326)||(42433421-42433504)
chr3 (236-325)||(8819372-8819461)
chr3 (264-328)||(47720905-47720969)
chr3 (231-317)||(43335275-43335361)
chr3 (239-336)||(44558464-44558561)
[»] chr5 (9 HSPs)
chr5 (137-467)||(4157476-4157806)
chr5 (236-320)||(5215101-5215185)
chr5 (236-328)||(35193240-35193332)
chr5 (236-416)||(35077958-35078139)
chr5 (264-377)||(8552982-8553095)
chr5 (236-391)||(18012860-18013014)
chr5 (361-435)||(17589526-17589601)
chr5 (156-205)||(17589795-17589844)
chr5 (237-328)||(3925535-3925628)
[»] chr4 (6 HSPs)
chr4 (236-452)||(23096379-23096597)
chr4 (155-206)||(12328295-12328346)
chr4 (270-328)||(20626620-20626678)
chr4 (236-325)||(12328412-12328501)
chr4 (240-328)||(22065793-22065881)
chr4 (367-454)||(7784902-7784989)
[»] chr1 (4 HSPs)
chr1 (236-327)||(8881431-8881522)
chr1 (372-427)||(14167677-14167732)
chr1 (370-432)||(18628769-18628831)
chr1 (238-276)||(48563419-48563457)
[»] scaffold0445 (1 HSPs)
scaffold0445 (236-327)||(10391-10482)
[»] chr7 (3 HSPs)
chr7 (266-315)||(43574029-43574078)
chr7 (361-435)||(14737184-14737259)
chr7 (360-417)||(1764155-1764212)
[»] chr6 (2 HSPs)
chr6 (373-417)||(592721-592765)
chr6 (239-328)||(31750232-31750321)
[»] scaffold0178 (1 HSPs)
scaffold0178 (360-432)||(9312-9385)
[»] scaffold0031 (1 HSPs)
scaffold0031 (161-206)||(96085-96130)
[»] chr8 (1 HSPs)
chr8 (363-411)||(26450656-26450704)


Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 2 - 481
Target Start/End: Original strand, 44741948 - 44742427
Alignment:
Q  2 ggatgtcgaagaatatgtaatgttggaagtaaatttaaaaaccccaaagggtatggttctttttaacccgtaagggctgtttggttactaacgtgtgttg 101  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44741948 ggatgtcaatgaaaatgtaatgttggaagtaaatttaaaaaccccaaagggtatggttctttt-aacccgtaagggctgtttggttactaacgtgtgttg 44742046  T
Q  102 ga-tcatcccttgatcagaattcaagcgcgtttggaaccgtttgtgttggtggtctgtgcttgattctcttatattctaggtctgttgagatctgcatgt 200  Q
    || ||||||||||||| |  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44742047 gactcatcccttgatctgggttcaagcgcgtctggaaccgtttgtgttggtggtccgtgcttgattctcttatattctaggtctgttgagatctgcatgt 44742146  T
Q  201 ctcaaggcgttaagattgctttctcttcggtattcttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44742147 ctcaaggcgttaagattgctttctcttcggtattcttatgctcgaaagagctattatgcatgttgttttgttcaggaggttgctggtacgtggatcttga 44742246  T
Q  301 tactgtgttggcggttgatctattcgcccactttaaccctttttgatctgaacggatgctcactcttcatcttttttgttacctggtttcgcgctcgtac 400  Q
    ||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44742247 tactgtgttggcgattgatctatttgccaactttaaccctttttgatctgaacggatgctcactcttcatcttttttgttacctggtttcgtgctcgtac 44742346  T
Q  401 acaggttcgctaggttgtgcctgtgatgagtgtttattttgttatgattgatcaaggctggtcaaccgagtttgtattatc 481  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||    
T  44742347 acaggttcgttaggttgtgcctgtgatgagtgtttattttgttaggattgatcaaggctgatcaatcaagtttgtattatc 44742427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 17303530 - 17303618
Alignment:
Q  240 gctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 328  Q
    |||||||||||||||||| | || || |||||||||| | ||| |||||||||||||| ||||  ||||||||||| ||||||||||||    
T  17303530 gctcgaaagagctattatacctgctgctttgttcagggggttgttggtacgtggatctcgatatcgtgttggcggtggatctattcgcc 17303618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 33050913 - 33050829
Alignment:
Q  244 gaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 328  Q
    ||||| |||||||| | || || |||||||||| | |  ||||||||||||| | ||||| ||||||||||| |||| |||||||    
T  33050913 gaaagggctattatacctgctgctttgttcaggggatcactggtacgtggatttggataccgtgttggcggtcgatccattcgcc 33050829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 35658270 - 35658326
Alignment:
Q  272 tcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 328  Q
    ||||||| ||||||||||||||||| |  ||| ||||||||||| |||| |||||||    
T  35658270 tcaggaggttgctggtacgtggatcgttttaccgtgttggcggtcgatccattcgcc 35658326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 38002210 - 38002282
Alignment:
Q  372 ttttttgttacctggtttcgcgctcgtacacaggttcgctaggttgtgcctgtgatgagtgtttattttgtta 444  Q
    |||||||| || ||||||||||| ||||| | |||| ||| ||||| ||||||||| |||| || ||||||||    
T  38002210 ttttttgtaacttggtttcgcgcccgtacgcgggtttgctgggttgcgcctgtgattagtgatttttttgtta 38002282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 40 - 478
Target Start/End: Original strand, 30934 - 31372
Alignment:
Q  40 aaaccccaaagggtatggttctttttaacccgtaagggctgtttggttactaacgtgtgttgga-tcatcccttgatcagaattcaagcgcgtttggaac 138  Q
    |||||| |||||||||||||||||  ||||  |||||| |||||||||||||||||||||| || ||||||| ||||| || ||||  | ||| || |||    
T  30934 aaacccgaaagggtatggttcttta-aacctataagggttgtttggttactaacgtgtgttagactcatcccatgatctgagttcagacacgtctgaaac 31032  T
Q  139 cgtttgtgttggtggtctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattctta 238  Q
     | ||||||||||||| ||||||||||||| | |||||  |||||||||||||| |||| |||||||||||| |||| ||||| ||||  ||||   |||    
T  31033 tggttgtgttggtggtttgtgcttgattctatgatatttcaggtctgttgagatatgcaggtctcaaggcgtcaagactgcttcctctctggtaccgtta 31132  T
Q  239 tgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccact-ttaac 337  Q
    ||||||||||||||||| ||| || ||||||||||||||| |||||||||||||||||||||||| |||||| |||| |||| ||||||| ||| |||||    
T  31133 tgctcgaaagagctattttgcctggtgttttgttcaggaggttgctggtacgtggatcttgataccgtgttgacggtcgatccattcgccaactcttaac 31232  T
Q  338 cctttttgatctgaacggatgctcactcttcatcttttttgttacctggtttcgcgctcgtacacaggttcgctaggttgtgcctgtgatgagtgtttat 437  Q
    || ||||||| ||||  |||||||||||||||| |||||||| | |||||||||||| ||||  | |||||||||||||| ||| ||||||||||||||     
T  31233 cc-ttttgatttgaatagatgctcactcttcatattttttgtaatctggtttcgcgcccgtatgcgggttcgctaggttgcgcccgtgatgagtgtttac 31331  T
Q  438 tttgttatgattgatcaaggctggtcaaccgagtttgtatt 478  Q
    ||||||| ||||||| | |||||||||||| ||||||||||    
T  31332 tttgttaagattgattagggctggtcaacccagtttgtatt 31372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 8e-93; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 40 - 478
Target Start/End: Complemental strand, 26373673 - 26373237
Alignment:
Q  40 aaaccccaaagggtatggttctttttaacccgtaagggctgtttggttactaacgtgtgttgga-tcatcccttgatcagaattcaagcgcgtttggaac 138  Q
    |||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| | ||| |  ||||  | ||| || |||    
T  26373673 aaacccgaaagggtatggttcttta-aacccgtaagggctgtttggttactaacgtgtgttggactcatcccataatctgggttcagacacgtctgaaac 26373575  T
Q  139 cgtttgtgttggtggtctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattctta 238  Q
     | ||||||||||||||||||||||||||| | |||||  || |||||||||||||||| |||||||||||| |||| ||||| |||| |||||   |||    
T  26373574 tggttgtgttggtggtctgtgcttgattctatgatatttcagttctgttgagatctgcaggtctcaaggcgtcaagactgcttcctctccggtaccgtta 26373475  T
Q  239 tgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccact-ttaac 337  Q
    ||||||||||||||||| ||| |||||||||||||| ||| |||||||||||||||||||||||| |||||| |||| |||| ||||||| ||| |||||    
T  26373474 tgctcgaaagagctattttgcttgttgttttgttcaagaggttgctggtacgtggatcttgataccgtgttgacggtcgatccattcgccaactcttaac 26373375  T
Q  338 cctttttgatctgaacggatgctcactcttcatcttttttgttacctggtttcgcgctcgtacacaggttcgctaggttgtgcctgtgatgagtgtttat 437  Q
    |||||| ||| ||||| |||||||||||||||| |||||||| |  |||||||||||  |||| | |||||||||||||| |||   ||||||||||||     
T  26373374 cctttt-gatttgaacagatgctcactcttcat-ttttttgtaatatggtttcgcgcctgtacgcgggttcgctaggttgcgcccacgatgagtgtttac 26373277  T
Q  438 tttgttatgattgatcaaggctggtcaaccgagtttgtatt 478  Q
    ||||||| |||||||  ||| |||||||||  |||||||||    
T  26373276 tttgttaagattgat-taggatggtcaacccggtttgtatt 26373237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 452
Target Start/End: Complemental strand, 9192412 - 9192194
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccactt-t 334  Q
    |||||||||||||||||||||| | |||||||||||||| | |  ||||||||||||||| ||||||| |||||||| || |||| | || || | ||      
T  9192412 ttatgctcgaaagagctattattcttgttgttttgttcatggggctgctggtacgtggattttgataccgtgttggcagtcgatccactcaccaatttaa 9192313  T
Q  335 aaccctttttgatctgaacgga-tgctcactcttcatcttttttgttacctggtttcgcgctcgtacacaggttcgctaggttgtgcctgtgatgagtgt 433  Q
    ||| |||||||||||| |   | ||||| ||||||||||||||||| |||||||||||||| ||||| |  ||||||||||||| ||| |||| |||||     
T  9192312 aactctttttgatctgtatacattgctcgctcttcatcttttttgtaacctggtttcgcgcccgtacgcgagttcgctaggttgcgccagtgaggagtgg 9192213  T
Q  434 ttattttgttatgattgat 452  Q
    || || ||| |||||||||    
T  9192212 ttgttatgtcatgattgat 9192194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 30499099 - 30499007
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 328  Q
    |||||||||||||||||| ||||||||||| |||||| ||| | |||||||||| |||||||||| || ||||||||||| |||| |||||||    
T  30499099 ttatgctcgaaagagctactatgcatgttgctttgttgagggggttgctggtacttggatcttgaaaccgtgttggcggtcgatccattcgcc 30499007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 240 - 320
Target Start/End: Original strand, 557578 - 557658
Alignment:
Q  240 gctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatc 320  Q
    |||||||||||||||||| | || ||||||||||||| | ||| |||||||||||||||||||| ||||||||||| ||||    
T  557578 gctcgaaagagctattatacctgatgttttgttcagggggttgttggtacgtggatcttgataccgtgttggcggtcgatc 557658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 326
Target Start/End: Complemental strand, 42433504 - 42433421
Alignment:
Q  242 tcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcg 326  Q
    |||||||||||||||| | || || |||||||||| ||| |||||||||||||||| ||||| ||||||||||| |||| |||||    
T  42433504 tcgaaagagctattatacctgctgctttgttcaggggtt-gctggtacgtggatctcgataccgtgttggcggtggatccattcg 42433421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 8819461 - 8819372
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattc 325  Q
    |||||||| ||||||||| ||||| || || |||||||||  | ||||||||||||||||||||| || || |||||||| |||| ||||    
T  8819461 ttatgctcaaaagagctactatgcctgctgatttgttcagtgggttgctggtacgtggatcttgaaaccgtattggcggtggatccattc 8819372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 47720905 - 47720969
Alignment:
Q  264 tgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 328  Q
    ||||||||||||| | ||| ||||||||||||||||||||  |||||||||| |||| |||||||    
T  47720905 tgttttgttcagggggttgttggtacgtggatcttgataccttgttggcggtcgatccattcgcc 47720969  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 43335361 - 43335275
Alignment:
Q  231 tattcttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttg 317  Q
    |||| ||||||||||||||||| |||| | ||||| |||| |||||   ||| |||||||||||| ||||| ||| |||||||||||    
T  43335361 tattgttatgctcgaaagagcttttatacttgttgctttggtcagggagttgttggtacgtggattttgattctgagttggcggttg 43335275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 44558561 - 44558464
Alignment:
Q  239 tgctcgaaagagctattatgcatgttgttttgttca-ggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccactttaa 336  Q
    |||||||||||||| |||||| || || | |||||| |||| | ||||| || ||||| |||||||||||||| ||||||||| ||||||| |||||||    
T  44558561 tgctcgaaagagcttttatgcttgctgctgtgttcacggagct-gctggcacttggattttgatactgtgttgccggttgatccattcgcctactttaa 44558464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 9e-71; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 137 - 467
Target Start/End: Original strand, 4157476 - 4157806
Alignment:
Q  137 accgtttgtgttggtggtctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattct 236  Q
    |||| ||||||||||||||||||||||||||| | |||||| |||||||||| |||||||| |||||||||||| |||| | ||| |||| ||||||  |    
T  4157476 accggttgtgttggtggtctgtgcttgattctttgatattccaggtctgttgtgatctgcaggtctcaaggcgtcaagactacttcctctccggtatcgt 4157575  T
Q  237 tatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccact-tta 335  Q
    |||||| |||||||||||| ||| |  | |||||||||||||  ||||||| ||||||||||||||| |||||| ||||  ||| ||||||| ||| |||    
T  4157576 tatgctggaaagagctattttgcctactattttgttcaggaggctgctggtgcgtggatcttgataccgtgttgacggtcaatccattcgccaactctta 4157675  T
Q  336 accctttttgatctgaacggatgctcactcttcatcttttttgttacctggtttcgcgctcgtacacaggttcgctaggttgtgcctgtgatgagtgttt 435  Q
    |||| ||||||||||||| |||| |||||||||||||||||||| | ||| |||||||| ||||| | |||||||||| |||||||  ||||||||||||    
T  4157676 accc-ttttgatctgaacagatgttcactcttcatcttttttgtaatctgttttcgcgcccgtacgcgggttcgctagcttgtgcccatgatgagtgttt 4157774  T
Q  436 attttgttatgattgatcaaggctggtcaacc 467  Q
    | |||||||  |||||| | ||||||| ||||    
T  4157775 actttgttaatattgattagggctggtaaacc 4157806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 5215101 - 5215185
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatc 320  Q
    |||||||||||||||||| ||||||||||| |||||||| | | ||| ||||||||||||||||| ||||||||| |||| ||||    
T  5215101 ttatgctcgaaagagctactatgcatgttgctttgttcaaggggttgttggtacgtggatcttgaaactgtgttgacggtcgatc 5215185  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 328
Target Start/End: Original strand, 35193240 - 35193332
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 328  Q
    |||||||||||||||||||||||| | ||| |||||||||||| ||| ||||||| ||||||| ||   ||||||  |||||||| |||||||    
T  35193240 ttatgctcgaaagagctattatgcctattggtttgttcaggaggttgttggtacgcggatctttatttcgtgttgctggttgatcaattcgcc 35193332  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 416
Target Start/End: Complemental strand, 35078139 - 35077958
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccactt-t 334  Q
    |||| ||||||||||||| | ||| || || ||| |||| | | || |||||||||||||||||| || ||||||||||| |||| |||||||   || |    
T  35078139 ttatactcgaaagagctactgtgcctgctgctttcttcatggggtttctggtacgtggatcttgaaaccgtgttggcggtcgatccattcgccattttat 35078040  T
Q  335 aaccctttttgatctgaacggatgctcactcttcatctttttt-gttacctggtttcgcgctcgtacacaggttcgctaggtt 416  Q
    |||||||||| |||   ||     | ||||||||||||||||| || || ||||||||||||||||||| |||||||||||||    
T  35078039 aacccttttt-atccatacattcacacactcttcatctttttttgtaacttggtttcgcgctcgtacacgggttcgctaggtt 35077958  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 8553095 - 8552982
Alignment:
Q  264 tgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccactttaaccctttttgatctgaacggatgctcac 363  Q
    ||||||||| ||||| ||| || || |||||||||||||  |||||| | |||||| |||||| | ||||||||| ||||| || || |||| ||||| |    
T  8553095 tgttttgtttaggaggttgttgataagtggatcttgatatcgtgttgacagttgatatattcgtcaactttaaccattttttatttgcacggttgctccc 8552996  T
Q  364 tcttcatctttttt 377  Q
    ||| ||||||||||    
T  8552995 tctccatctttttt 8552982  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 391
Target Start/End: Original strand, 18012860 - 18013014
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccactt-t 334  Q
    |||| ||| |||||||| || |||||| || |||||||| | | ||| |||||||||||||||||||| || ||||||||  ||| ||||||| ||||      
T  18012860 ttatactcaaaagagct-ttgtgcatgctgctttgttcaaggggttgttggtacgtggatcttgataccgtattggcggtcaatcaattcgccaacttaa 18012958  T
Q  335 aaccctttttgatctgaacggatgctcactcttcatcttttttgttacctggtttcg 391  Q
    |||||| ||| |||   || || | ||||||||||||||||| || |||||||||||    
T  18012959 aaccctcttttatc-ctacagacgatcactcttcatctttttcgtaacctggtttcg 18013014  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 17589601 - 17589526
Alignment:
Q  361 cactcttcatctt-ttttgttacctggtttcgcgctcgtacacaggttcgctaggttgtgcctgtgatgagtgttt 435  Q
    ||||||||||||| |||||| || ||||||||| | ||||| | ||||||||| ||||||| ||||| ||||||||    
T  17589601 cactcttcatctttttttgtaacttggtttcgcacccgtacgcgggttcgctaagttgtgcttgtgaggagtgttt 17589526  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 17589844 - 17589795
Alignment:
Q  156 tgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaa 205  Q
    |||| |||||||||| || ||| ||||||||||||||||||| |||||||    
T  17589844 tgtggttgattctctgatgttccaggtctgttgagatctgcaggtctcaa 17589795  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 3925535 - 3925628
Alignment:
Q  237 tatgctcgaaagagctattatg---catgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 328  Q
    |||||||||||||||||||||    | || || |||||||||| | |||||||||||||||| ||| ||| ||||||| ||| |||| |||||||    
T  3925535 tatgctcgaaagagctattattatacctgctgctttgttcagggggttgctggtacgtggat-ttgttaccgtgttggtggtcgatccattcgcc 3925628  T

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Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 236 - 452
Target Start/End: Complemental strand, 23096597 - 23096379
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccactt-t 334  Q
    |||||||||||||||||||||||||||||||||| |||||  |  ||||||||||||||| ||||||| ||||||||||| |||| |||| || | ||      
T  23096597 ttatgctcgaaagagctattatgcatgttgttttattcagcgggatgctggtacgtggattttgataccgtgttggcggtcgatccattcaccaatttaa 23096498  T
Q  335 aaccctttttgatctgaacgga-tgctcactcttcatcttttttgttacctggtttcgcgctcgtacacaggttcgctaggttgtgcctgtgatgagtgt 433  Q
    ||| |||||||||||| |   | ||||| ||||||||||||||||| |||||||||||||| |||||||  ||||||||||||| | |  ||| ||||||    
T  23096497 aactctttttgatctgtatacattgctcgctcttcatcttttttgtaacctggtttcgcgcccgtacacgagttcgctaggttgcgtccctgaggagtgt 23096398  T
Q  434 ttattttgttatgattgat 452  Q
    || || | |||||||||||    
T  23096397 ttgttattttatgattgat 23096379  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 12328295 - 12328346
Alignment:
Q  155 ctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaag 206  Q
    |||||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  12328295 ctgtgcttgattctctaatattctaggtctgttgagatctacaagtctcaag 12328346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 20626678 - 20626620
Alignment:
Q  270 gttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 328  Q
    ||||||| | ||||| |||||||||||||||||| |||||||||||||||| |||||||    
T  20626678 gttcagggggttgctagtacgtggatcttgataccgtgttggcggttgatccattcgcc 20626620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 12328412 - 12328501
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattc 325  Q
    ||||||||||||||||||||||||  | ||| ||||||||| | ||||||||| ||||||| |||||| || ||| |||| |||| ||||    
T  12328412 ttatgctcgaaagagctattatgccggctgtgttgttcagggggttgctggtatgtggatcgtgataccgtattgacggtcgatccattc 12328501  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 22065793 - 22065881
Alignment:
Q  240 gctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 328  Q
    |||||||| | ||||||| | || || |||||| ||| | ||| |||||||||||||||||||| ||||||||||| |||| |||||||    
T  22065793 gctcgaaaaaactattatacctgctgctttgttaagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccattcgcc 22065881  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 454
Target Start/End: Original strand, 7784902 - 7784989
Alignment:
Q  367 tcatcttttttgttacctggtttcgcgctcgtacacaggttcgctaggttgtgcctgtgatgagtgtttattttgttatgattgatca 454  Q
    ||||||||||||| || |||||||| |||||||| | |||||||| ||||||| |  ||||||| |||| ||| |||| |||| ||||    
T  7784902 tcatcttttttgtaacttggtttcgagctcgtacgcgggttcgctgggttgtgtcaatgatgagagtttgtttcgttaggatttatca 7784989  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 8881522 - 8881431
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgc 327  Q
    |||||||||||| ||||||||||| ||||||||| || ||||| ||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  8881522 ttatgctcgaaatagctattatgcctgttgtttttttaaggaggttgctggtacgtggatcttgaaactatgttggccgttgatccattcgc 8881431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 14167732 - 14167677
Alignment:
Q  372 ttttttgttacctggtttcgcgctcgtacacaggttcgctaggttgtgcctgtgat 427  Q
    |||||||| || ||||||||||| | |||||||||||||||||||| |||||||||    
T  14167732 ttttttgtaacttggtttcgcgcgcatacacaggttcgctaggttgcgcctgtgat 14167677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 18628831 - 18628769
Alignment:
Q  370 tcttttttgttacctggtttcgcgctcgtacacaggttcgctaggttgtgcctgtgatgagtg 432  Q
    |||||||||| |||||||||||||| ||||| | |||||||||||||| ||| ||||| ||||    
T  18628831 tcttttttgtaacctggtttcgcgcccgtacgcgggttcgctaggttgcgcccgtgattagtg 18628769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 276
Target Start/End: Original strand, 48563419 - 48563457
Alignment:
Q  238 atgctcgaaagagctattatgcatgttgttttgttcagg 276  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  48563419 atgctcgaaagagctattatgcttgttgttttgttcagg 48563457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 10391 - 10482
Alignment:
Q  236 ttatgctcgaaagagctattatgcatgttgttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgc 327  Q
    |||||||| ||||||||  ||||| || || |||||||||| | ||||||||||||||||||||| |||||||||||||| |||| ||||||    
T  10391 ttatgctcaaaagagcttctatgcctgctgctttgttcagggggttgctggtacgtggatcttgaaactgtgttggcggtggatccattcgc 10482  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 43574078 - 43574029
Alignment:
Q  266 ttttgttcaggagtttgctggtacgtggatcttgatactgtgttggcggt 315  Q
    |||| |||||| | |||||||||||||||||||||||| |||||||||||    
T  43574078 ttttattcagggggttgctggtacgtggatcttgataccgtgttggcggt 43574029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 14737184 - 14737259
Alignment:
Q  361 cactcttcatctttttt-gttacctggtttcgcgctcgtacacaggttcgctaggttgtgcctgtgatgagtgttt 435  Q
    ||||||||||||||||| || || ||||||||||| ||||| |  |||||||| ||||||| ||||| ||||||||    
T  14737184 cactcttcatctttttttgtaacttggtttcgcgcccgtacgcgtgttcgctaagttgtgcttgtgaggagtgttt 14737259  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 1764212 - 1764155
Alignment:
Q  360 tcactcttcatcttttttgttacctggtttcgcgctcgtacacaggttcgctaggttg 417  Q
    ||||| ||||||||||||||||||||||||  | | ||||| | ||||||||||||||    
T  1764212 tcacttttcatcttttttgttacctggtttgactcccgtacgccggttcgctaggttg 1764155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 592765 - 592721
Alignment:
Q  373 tttttgttacctggtttcgcgctcgtacacaggttcgctaggttg 417  Q
    ||||||| |||||||||||||||| || |||||||||||||||||    
T  592765 tttttgtaacctggtttcgcgctcctatacaggttcgctaggttg 592721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 328
Target Start/End: Original strand, 31750232 - 31750321
Alignment:
Q  239 tgctcgaaagagctattatgcatgttgttttgttca-ggagtttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 328  Q
    ||||||||||||||||||| | || || ||| |||| || | |||||||||||||||| ||| ||| ||||||||||| |||| |||||||    
T  31750232 tgctcgaaagagctattatacctgctgctttattcaggggggttgctggtacgtggat-ttgttaccgtgttggcggtcgatccattcgcc 31750321  T

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Target: scaffold0178 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 9385 - 9312
Alignment:
Q  360 tcactcttcatc-ttttttgttacctggtttcgcgctcgtacacaggttcgctaggttgtgcctgtgatgagtg 432  Q
    |||||||||||  |||||||| || ||||||||| | ||||| | |||||||||||||| ||||||||| ||||    
T  9385 tcactcttcatagttttttgtaacttggtttcgcacccgtacgcgggttcgctaggttgcgcctgtgattagtg 9312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 96130 - 96085
Alignment:
Q  161 ttgattctcttatattctaggtctgttgagatctgcatgtctcaag 206  Q
    |||||||||| || ||| || |||||||||||||||||||||||||    
T  96130 ttgattctctgatgttccagatctgttgagatctgcatgtctcaag 96085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 26450704 - 26450656
Alignment:
Q  363 ctcttcatcttttttgttacctggtttcgcgctcgtacacaggttcgct 411  Q
    ||||||||||||||||| ||  |||||||||| ||||| ||||||||||    
T  26450704 ctcttcatcttttttgtaactgggtttcgcgcccgtacgcaggttcgct 26450656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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