View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20079_low_5 (Length: 419)
Name: NF20079_low_5
Description: NF20079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20079_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 40748402 - 40748803
Alignment:
| Q |
1 |
aattacacttgaataagttgtttagtaaatgtaaagttagttttatttatttataatgaatccatgggtcgtactcttttctcctgaaaatatatctatc |
100 |
Q |
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| T |
40748402 |
aattacacttgaataagttgtttagtaaatgtaaagttagttttatttatttataatgaatccatgggtcgtactcttttctcctgaaaatatatctatc |
40748501 |
T |
|
| Q |
101 |
gagtaaagactaaagagaccaggcatgtgaccaaggatagagatgaggttaaaagctgacatattatattctctactttattataagaacttttggtttt |
200 |
Q |
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| T |
40748502 |
gagtaaagactaaagagaccaggcatgtgaccaaggatagagatgaggttaaaagctgacatattatattctctactttattataagaacttttggtttt |
40748601 |
T |
|
| Q |
201 |
atctttcacatatatgcaagtgaaatcaatagaaagcaaaccagatcaccactccagctataacaattagctcatgcacaacctcataaactatatggct |
300 |
Q |
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| T |
40748602 |
atctttcacatata-gcaagtgaaatcaatagaaagcaaaccagatcaccactccagctataacaattagctcatgcacaacctcataaactatatggct |
40748700 |
T |
|
| Q |
301 |
actttttcttgtcttttaacagaataatcacttatctcttacagcatttaggtaccctccaaaagaatttttgttgatttcttagctttagttttgttac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40748701 |
actttttcttgtcttttaacagaataatcacttatctcttacagcatttaggtaccctccaaaagaatttttgttgatttcttagctttagttgtgttac |
40748800 |
T |
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| Q |
401 |
tcc |
403 |
Q |
| |
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| T |
40748801 |
tcc |
40748803 |
T |
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