View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2007_high_1 (Length: 417)
Name: NF2007_high_1
Description: NF2007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2007_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 42263880 - 42264270
Alignment:
| Q |
18 |
agtgttggtgttatattttgataggggtctgatttttctggtgtagttatttggctgcacttttattgcatttgtatgcctaataagttgagcttagggc |
117 |
Q |
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| T |
42263880 |
agtgttggtgttatattttgataggggtctgatttttctggtgtagttatttggttgcacttttattgcatttgtatgcctaataagttgagcttagggc |
42263979 |
T |
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| Q |
118 |
cgtgtaccttttgaccctttatgattatctcttgtgatcggtttagtggcgtcgtgtttcaatatatttcactttttcgnnnnnnnttcttactccgttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42263980 |
tgtgtaccttttgaccctttatgattatctcttgtgatcggtttagtggcgtcgtgtttcaatatatttcactttttcgaaaaaaattcttactccgttt |
42264079 |
T |
|
| Q |
218 |
gaaactaaaagatataaatttcctacatagactatgacacatggttttatttttgtc--nnnnnnnntagcacgtgtttcctacaattattagctgtttt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
42264080 |
gaaactaaaagatataaatttcctacatagactatgacacatggttttatttttgtcaaaaaaaaaatagcacatgtttcctacaattattagctgtttt |
42264179 |
T |
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| Q |
316 |
gtttatgcacacaaagggatagttctgattgtaactttgtaaggagcttgtctcctctacatatgcttatctgtattaaatttcagttcat |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42264180 |
gtttatgcacacaaagggatagttctgattgtaactttgtaaggagcttgtctcctctacatatgcttatctgtattaaatttcagttcat |
42264270 |
T |
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