View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2007_high_2 (Length: 334)
Name: NF2007_high_2
Description: NF2007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2007_high_2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 6451551 - 6451869
Alignment:
| Q |
16 |
atacgagttttatgttgtttgatatgctaatactataatatgtgagtgtgacgaacatgttaactataggtaggtggtttgattaagatgaataaagtac |
115 |
Q |
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| T |
6451551 |
atacgagttttatgttgtttgatatgctaatactataatatgtgagtgtgacgaacatgttaactataggtaggtggtttgattaagatgaataaagtac |
6451650 |
T |
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| Q |
116 |
ctctaattacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctgatttggctgagtatatc |
215 |
Q |
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| T |
6451651 |
ctctaattacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctgatttggctgagtatatc |
6451750 |
T |
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| Q |
216 |
tgtaggaagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaaactcattcggggtgaaattcagatcaaaaattacagattgtaac |
315 |
Q |
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| T |
6451751 |
tgtaggaagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaaactcattcggggtgaaattcagatcaaaaattacagattgtaac |
6451850 |
T |
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| Q |
316 |
aaaggcaaaacgtcttgtg |
334 |
Q |
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| T |
6451851 |
aaaggcaaaacgtcttgtg |
6451869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 102 - 310
Target Start/End: Original strand, 6457727 - 6457935
Alignment:
| Q |
102 |
gatgaataaagtacctctaattacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctgatt |
201 |
Q |
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| T |
6457727 |
gatgaacaaggtacctttgattacatgaggaggtggaaacttgaggacttgttcaccgtcagtgcgaaagatttccttaagggccggtaagggactaatt |
6457826 |
T |
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| Q |
202 |
tggctgagtatatctgtaggaagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaaactcattcggggtgaaattcagatcaaaaa |
301 |
Q |
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| T |
6457827 |
tgactaagtatatctgtaggaagcttaatcccaccttcgaaaagtccacgtacttcatcgaagctatcgaactcatttggtgtgaaattgaggtcaaaaa |
6457926 |
T |
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| Q |
302 |
ttacagatt |
310 |
Q |
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| T |
6457927 |
tcacagatt |
6457935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 6264220 - 6264308
Alignment:
| Q |
199 |
atttggctgagtatatctgtaggaagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaaactcattcggggtgaa |
287 |
Q |
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| T |
6264220 |
atttggctaagtatatctgttggtagcttaattcctccttcatatagatcaagcacatcatcaaagctatcaaattcattcggtgtgaa |
6264308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 100 - 320
Target Start/End: Complemental strand, 9603701 - 9603481
Alignment:
| Q |
100 |
aagatgaataaagtacctctaattacttgaggtggtggaaacttaagggcttgttcaccgtctgtgcggaggatttccttaagggctggcaaggggctga |
199 |
Q |
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||||| ||||| |||||||| ||||| || |||||||||||||| ||| |||||||||| || ||||||| |||||||| || |||| ||||| |||| |
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| T |
9603701 |
aagattaataatgtacctctgattacatgtggtggtggaaacttgaggacttgttcaccatcagtgcggaaaatttccttgagtactggtaagggactga |
9603602 |
T |
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| Q |
200 |
tttggctgagtatatctgtaggaagcttaattccaccttcgaa-aagtccacgcacttcatcgaagctatcaaactcattcggggtgaaattcagatcaa |
298 |
Q |
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| T |
9603601 |
ttttgctcaatatatgtgtaggaagttcaattccaccttcaaataagt-cacgcacttcatcgaagctatcaaactcatttggagtgaaattcaaatcaa |
9603503 |
T |
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| Q |
299 |
aaattacagattgtaacaaagg |
320 |
Q |
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| T |
9603502 |
agattacagatttaaacaaagg |
9603481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 42693925 - 42694025
Alignment:
| Q |
208 |
agtatatctgtaggaagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaaactcattcggggtgaaattcagatcaaaaattacag |
307 |
Q |
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|||| |||||| || |||||||||||||| || | | |||| | |||||||| ||||||||||||||||| || |||||||| | |||||| ||||||| |
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| T |
42693925 |
agtacatctgttggcagcttaattccaccctcatacaatccatgaacttcatcaaagctatcaaactcatttggtgtgaaatttaaatcaaagattacag |
42694024 |
T |
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| Q |
308 |
a |
308 |
Q |
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| T |
42694025 |
a |
42694025 |
T |
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