View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2007_low_8 (Length: 212)
Name: NF2007_low_8
Description: NF2007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2007_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 25085259 - 25085074
Alignment:
| Q |
17 |
acttacaagaaaggtggcatcaacttattgagaagaatatatggatcttcatagtattgaatgtaatgaatttaatgaaatatcatttgcagcatataca |
116 |
Q |
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| T |
25085259 |
acttacaagaaaggtggcatcaacttattgagaagaatatatagatcttcatagtattgaatgtaatgaatttaatgaa-tatcatttgcagcatataca |
25085161 |
T |
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| Q |
117 |
taagtttttatgcttgaatatttacatttatagttgtgtacaatatgattattttgattttgttgacaaatactcacctatgctact |
203 |
Q |
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| T |
25085160 |
taagtttttatgcttgaatatttacatttatagttgtgtacaatatgattattttgattttgttgacaaatactcacccatgatact |
25085074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 25073607 - 25073524
Alignment:
| Q |
42 |
tattgagaagaatatatggatcttcatagtattgaatgtaatgaatttaatgaaatatcatttgcagcatatacataagttttta |
126 |
Q |
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| T |
25073607 |
tattgagaagaatatatagaccttcatagtattaaacctattgaatttaatg-tataccatttgcaatatagacataagttttta |
25073524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 25091346 - 25091304
Alignment:
| Q |
85 |
aatttaatgaaatatcatttgcagcatatacataagtttttatg |
128 |
Q |
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| T |
25091346 |
aatttaatgaa-taccatttgcagcatatacataagtttttatg |
25091304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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