View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20080_high_3 (Length: 330)
Name: NF20080_high_3
Description: NF20080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20080_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 5978916 - 5979221
Alignment:
| Q |
1 |
aagtattgtttccttcaaattacaacagtccacacacaaaattgatactaaattttgcatccctctctaaattaaattcaactcggttggaaggcgatca |
100 |
Q |
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| T |
5978916 |
aagtattgtttccttcaaattacaaccgtccacacacaaaattgatactaaattttgcacccctctctaaattaaattcaactcggttgaaaggcgatcg |
5979015 |
T |
|
| Q |
101 |
tttagtaatctccatgcaacggtgaatcttcaataaaactaaattattccaagtgactttaaacaaaggtgaatcttctacaaattcaaatcacaaccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5979016 |
tttagtaatctccatgcaacggtgaatcttcaatgaaactaaattattccaagtgaccttaaacaaaggtgaatcttctacaaattcaaatcataaccct |
5979115 |
T |
|
| Q |
201 |
ttcnnnnnnnnnnnnnnnnnnaatatagctaaattaaaaactttttggtttctcacttccctaagaaatcaccgttgttggagccaacgttcataaaaat |
300 |
Q |
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||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5979116 |
ttc--------ctctctctctaatattgctaaattaaaaactttgtggtttctcacttccctaagaaatcactattgttggagccaacgttcataaaaat |
5979207 |
T |
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| Q |
301 |
gaagctaaacttgt |
314 |
Q |
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|||||||||||||| |
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| T |
5979208 |
gaagctaaacttgt |
5979221 |
T |
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