View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20080_high_4 (Length: 303)
Name: NF20080_high_4
Description: NF20080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20080_high_4 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 24708278 - 24708574
Alignment:
| Q |
7 |
aattcttgtgcagttttgtattcaatggaagcctcgttcttttacttaagccaaatctctcaaaagttttgctctctttcttatttgaatgttaaacaaa |
106 |
Q |
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| T |
24708278 |
aattcttattcagttttgtattcaatcgcagcatcgttcttttacttaggccaaatctctcaatagttttgctctctttcttatttgcatgttaaacaaa |
24708377 |
T |
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| Q |
107 |
atatattgctttagtttgtgtgtgtatgtagtttgattagggcttgaacgattcctgcagtattcgtgtctcaaatgaactcggggctggtcacccacgg |
206 |
Q |
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| T |
24708378 |
atctattgctttagtttgtgtgtgtatgtagtttgactagggcttgaatgattcttgcagtattcgtgtctcaaatgaactcggggctggtcatccacgg |
24708477 |
T |
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| Q |
207 |
gccgcgcgtttggcagtatatgtcgttgtagtgattgccattattgagggcatcttagttggagctgtgattatactaattcgcaatatattgggat |
303 |
Q |
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| T |
24708478 |
gctgtacgtttggcagtgaatgtcgttgtagtgattgccattattgagggcatcttagttggagctgtgattatactaattcgcaatatattgggat |
24708574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 79 - 303
Target Start/End: Complemental strand, 30511540 - 30511320
Alignment:
| Q |
79 |
tctctttcttatttgaatgttaaacaaaatatattgctttagtttgtgtgtgtatgtagtttgattagggcttgaacgattcctgcagtattcgtgtctc |
178 |
Q |
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| T |
30511540 |
tctctttcttttttgcatgttagaaaaattccattgctttagtttgtgt----atgtagtttcattaatgcttgaatgactcttgcagcattcgtgtctc |
30511445 |
T |
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| Q |
179 |
aaatgaactcggggctggtcacccacgggccgcgcgtttggcagtatatgtcgttgtagtgattgccattattgagggcatcttagttggagctgtgatt |
278 |
Q |
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| T |
30511444 |
gaatgaactcggggctggtaatccacgggccgcacgtttggcagtgtatgtcgttgtagtgatagccattattgagagcatcgtagttggagctgtgatt |
30511345 |
T |
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| Q |
279 |
atactaattcgcaatatattgggat |
303 |
Q |
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| T |
30511344 |
atactaattcgcaatatatggggat |
30511320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 30501785 - 30501619
Alignment:
| Q |
137 |
gtttgattagggcttgaacgattcctgcagtattcgtgtctcaaatgaactcggggctggtcacccacgggccgcgcgtttggcagtatatgtcgttgta |
236 |
Q |
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| T |
30501785 |
gtttcattagcgcttgaatgtttcttgcagcgttcgtgtttcaaatgaactcggtgctggtaatccacaggctgcacgtttggcagtctgcgtcgttgta |
30501686 |
T |
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| Q |
237 |
gtgattgccattattgagggcatcttagttggagctgtgattatactaattcgcaatatattgggat |
303 |
Q |
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| T |
30501685 |
gtaattgccattattgagagcattttagttggagcagtggttatgctaattcgcaatatatggggat |
30501619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 289
Target Start/End: Complemental strand, 30483812 - 30483671
Alignment:
| Q |
148 |
gcttgaacgattcctgcagtattcgtgtctcaaatgaactcggggctggtcacccacgggccgcgcgtttggcagtatatgtcgttgtagtgattgccat |
247 |
Q |
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| T |
30483812 |
gcttgaatgattattgcagcattcgtgtttcaaatgaacttggtgctggtcatccacaggctgcgcgtttggcagtttgcgtcgttgtagtgattgccgt |
30483713 |
T |
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| Q |
248 |
tattgagggcatcttagttggagctgtgattatactaattcg |
289 |
Q |
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| T |
30483712 |
tattgagagcatcttagttggcggagtgattatactagttcg |
30483671 |
T |
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