View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20080_low_1 (Length: 441)
Name: NF20080_low_1
Description: NF20080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20080_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 441
Target Start/End: Original strand, 5978377 - 5978800
Alignment:
| Q |
10 |
aagaaaatggaatttgtctgcaccatttcataacaggaatttgtctgcaacattccatagcatgactaaaaataaaaccataacatgttacgataaatnn |
109 |
Q |
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| T |
5978377 |
aagaaaatggaatttgtctgcaccatttcataacaggaatttgtctgcaacattccatagcatgactaaaaataaaaccataacatgttacgataaa--- |
5978473 |
T |
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| Q |
110 |
nnnnnnnnnnnnnnctaccgtcaatgattacataaaatgcatcaaaataacgatgtcttcagaccgaaaaataaatgaaattaaccgacaaaaaagaata |
209 |
Q |
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| T |
5978474 |
-aaaaaaaaaaaaactaccgtcaatgattacataaaatgcatcaaaataacgatgtcttcaaaccgaaaaataaatgaaattaaccgacaaaaaa-aata |
5978571 |
T |
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| Q |
210 |
cttcaaatatgagtggttgagtgctccattgatagtagtagtcataagaaaatgccttatcattaaacttgatccatggccacaccagaagtttaatcat |
309 |
Q |
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| T |
5978572 |
cttcaaatatgagtgattgagtgctccattgatagt---agtcataagaaaatgccttatcattaaacttgatctatggccacaccagaagtttaatcat |
5978668 |
T |
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| Q |
310 |
atcatcaaaaggtgaacctaataagcgatcctgattaccgaaaaccacattattacgatgcttcaaaattgaccacgtacaagataaccaaatcgaatga |
409 |
Q |
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| T |
5978669 |
atcatcaaaaggtgaacctaataagccatcctgattaccgaaaaccacattgttacgatgcttctaaattgaccacgtataagataaccaaatcgaatga |
5978768 |
T |
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| Q |
410 |
attcctttacgtcctatacatgataaaccaaa |
441 |
Q |
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| T |
5978769 |
attcctttacgtcctatacatgataaaccaaa |
5978800 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 384
Target Start/End: Complemental strand, 35323909 - 35323752
Alignment:
| Q |
225 |
gttgagtgctccattgatag-tagtagtcataagaaaatgccttatcattaaacttgatccatggccacaccagaagtttaatcatatcatcaaaaggtg |
323 |
Q |
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| T |
35323909 |
gttgagtgcttcattgatatataataatcataagaaaaccccttatctttaaatttgatccaagacaacaacaaaagtttaaccat---atcaaaaggtg |
35323813 |
T |
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| Q |
324 |
aacctaataagcgatcctgattaccgaaaaccacattattacgatgcttcaaaattgacca |
384 |
Q |
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| T |
35323812 |
aacccaataaccaaactttattaccaaaaatcacatggttacaatgcttttaaattgacca |
35323752 |
T |
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