View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20080_low_2 (Length: 355)
Name: NF20080_low_2
Description: NF20080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20080_low_2 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 33441799 - 33441466
Alignment:
| Q |
16 |
gtttaatattggatgttaatcgatcatgtgtgatgtttcaaggagaggctannnnnnnnnnaccttctagttattactaataattagcccccttcattat |
115 |
Q |
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| T |
33441799 |
gtttaagattggatgttaaccgatcatgtgtgatgtttcaaggagaggctgtttttttc---ccagttagttattactaataattagcccccttcattat |
33441703 |
T |
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| Q |
116 |
tatttatttagtttgtttacattggtgaatgtaatatcattttgttatttatgattaataaaagccatgagaggcattgagattatttgctgatggataa |
215 |
Q |
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| T |
33441702 |
tatttatttagtttgtttacattggtgaatgtaatatcattttgttatttatgattaataaaacccatgagaggcattgagattatttgctgatggataa |
33441603 |
T |
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| Q |
216 |
tatgtcagttcatcctactctgaaattgtttatatggtgaaaccatatacaatgaattgctagagctagctagaggtgaagtagagagtagcttgatgtc |
315 |
Q |
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| T |
33441602 |
tatgtcacttcaacttactctgaaattgtttatatggtgaaaccatatacaatgaattgctagagctagctagagctgaagtagagagtagcttgatgtc |
33441503 |
T |
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| Q |
316 |
gtgaattaagggtttatgtggaaaattattgcaatat |
352 |
Q |
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| T |
33441502 |
gtgaattaagggtttatgtggaaaattattgcaatat |
33441466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 33452019 - 33451791
Alignment:
| Q |
16 |
gtttaatattggatgttaatcgatcatgtgtgatgtttcaaggagaggctannnnnnnnnnaccttctagttattactaataattagcccccttcattat |
115 |
Q |
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| T |
33452019 |
gtttaagattggatgttaaccgatcatgtgtgatgtttcaaggagaggctgtttttttc---ccagttagttattactaataattagcccccttcattat |
33451923 |
T |
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| Q |
116 |
tatttatttagtttgtttacattggtgaatgtaatatcattttgttatttatgattaataaaagccatgagaggcattgagattatttgctgatggataa |
215 |
Q |
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| T |
33451922 |
tatttatttagtttgtttacattggtgaatgtaatatcattttgttatttatgattaataaaacccatgagaggcattgagattatttgctgatggataa |
33451823 |
T |
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| Q |
216 |
tatgtcagttcatcctactctgaaattgttta |
247 |
Q |
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| T |
33451822 |
tatgtcagttcaacttactctgaaattgttta |
33451791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 173 - 352
Target Start/End: Original strand, 1400 - 1579
Alignment:
| Q |
173 |
ataaaagccatgagaggcattgagattatttgctgatggataatatgtcagttcatcctactctgaaattgtttatatggtgaaaccatatacaatgaat |
272 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
1400 |
ataaaagccatgagaggcattgagattatttgctgagggataatatgtcagtttatcctac-ctgaa-ttgcttatatggtgaaaccatatacaatgaag |
1497 |
T |
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| Q |
273 |
tgctagagctagctagaggtgaagtagagagtagcttgatgtcgt--gaattaagggtttatgtggaaaattattgcaatat |
352 |
Q |
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| T |
1498 |
tgttagagctagctagaggtgaagtagacagtagcttgatgttgttaggtctaggggtttatgtggaaaattattgcaatat |
1579 |
T |
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