View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20080_low_5 (Length: 274)
Name: NF20080_low_5
Description: NF20080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20080_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 4144678 - 4144916
Alignment:
| Q |
8 |
tcgaagaatatggcatgtttcatatgaattcatcttttggttgagcaagattctaaaactcttgcagcatatagaaaatccaaactatgcaagtgtatat |
107 |
Q |
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| T |
4144678 |
tcgaaaaatgtggcatgtttcatatgaattcatcttttggttgagcaagattctaaaactcttgcagcatatagaaaatccaaactatgcaagtgtatat |
4144777 |
T |
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| Q |
108 |
tattattctttaaaattccaatccctctgaaaaagtatgagtgattatcgttagagcattgtagtttcagattctatacatagtatacttttcatattat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4144778 |
tattattctttaaaattccaatccctctgaaaaagtataagtgattatcgttagagcattgtagtttcagattctatacatagtatacttttcatattat |
4144877 |
T |
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| Q |
208 |
tgatgattattgatggtttaactaatgtgatgtttgtttgggccgatat |
256 |
Q |
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| T |
4144878 |
tgatga----------tttaactaatgtgatgtttgtttgggccgatat |
4144916 |
T |
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