View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20080_low_6 (Length: 259)
Name: NF20080_low_6
Description: NF20080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20080_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 33442270 - 33442498
Alignment:
| Q |
15 |
gagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatcaccaactacaaaatcttttgccacagccatggtt |
114 |
Q |
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| T |
33442270 |
gagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatcaccaactacaaaatcttttgccacagccatggtt |
33442369 |
T |
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| Q |
115 |
gagaagatagtagcaatgagagcaaagaggaaaagagcacgagaaagagccatgtatgaagtactagtattgctctttctttgtttaatttggttactta |
214 |
Q |
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| T |
33442370 |
gagaagatagtagcaatgaaagcaaagaggaaaagagcacgagaaagagccatagttgaagtactagtattgctctttctttgtttaattttgttactta |
33442469 |
T |
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| Q |
215 |
ggataagagattgaatacgggtatatata |
243 |
Q |
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| T |
33442470 |
atataagagattgaatacgggtatatata |
33442498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 33452520 - 33452749
Alignment:
| Q |
15 |
gagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatcaccaactacaaaatcttttgccacagccatggtt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
33452520 |
gagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatctccaactacaaaatcttttgccacggccatggtt |
33452619 |
T |
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| Q |
115 |
gagaagatagtagcaatgagagcaaagaggaaaagagcacgagaaagagccatgtatgaagtactagtattgctctttctttgtttaatttggttactta |
214 |
Q |
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| T |
33452620 |
gagaagatggaagcaatgagagcaaagagaaaaagagcacgagaaagagccatgtatgaagtactagtattgctctttctttgtttaatttggttacttt |
33452719 |
T |
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| Q |
215 |
ggataagagattgaatacgggtatatatat |
244 |
Q |
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| T |
33452720 |
ctataagagattaaatacagatatatatat |
33452749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 33400055 - 33400207
Alignment:
| Q |
15 |
gagacgaaagaccttgtttgcggtccaagtttggtaatcaaaca-aagtagtccaacccttttcatcaccaactacaaaatcttttgccacagccatggt |
113 |
Q |
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||||||||||||||||||||| | ||||| ||||||||||| | |||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
33400055 |
gagacgaaagaccttgtttgcagcccaagcttggtaatcaaccccaagt-gtccaaccactttcatctccaactacaaaatcttttgccacagccatggt |
33400153 |
T |
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| Q |
114 |
tgagaagatagtagcaatgagagcaaagaggaaaagagcacgagaaagagccat |
167 |
Q |
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| T |
33400154 |
tgagaagatagtagcaatgagagcaaagaggaaaagagaacgagaaagagccat |
33400207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 33397030 - 33397122
Alignment:
| Q |
75 |
ttcatcaccaactacaaaatcttttgccacagccatggttgagaagatagtagcaatgagagcaaagaggaaaagagcacgagaaagagccat |
167 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
33397030 |
ttcatctccaactacaaaatcttttgccacagccatggttgaaaagatagtagcaatgagagcaaagagaaaaagaacacgagaaagagccat |
33397122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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