View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20080_low_9 (Length: 243)
Name: NF20080_low_9
Description: NF20080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20080_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 34 - 239
Target Start/End: Complemental strand, 24708762 - 24708557
Alignment:
| Q |
34 |
tagaagctcccatatgtatctatcattgttttttactcggccactatgaagacatagaattaaaagttattgggaataagagaaacctgaaagaacacat |
133 |
Q |
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| T |
24708762 |
tagaaactcccatatgtctctatcattgttttttaatcggccactatgaagacaataaattaaacgttatttggaataagagaaacctgaaagaacacat |
24708663 |
T |
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| Q |
134 |
tgtagtccatccagaaagttggatactgcaataattggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatatat |
233 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24708662 |
tgaagtccatccagaaagttggatactgcaataataggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatatat |
24708563 |
T |
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| Q |
234 |
tgcgaa |
239 |
Q |
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|||||| |
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| T |
24708562 |
tgcgaa |
24708557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 30511132 - 30511337
Alignment:
| Q |
33 |
ttagaagctcccatatgtatctatcattgttttttactcggccactatgaagacatagaattaaaagttattgggaataagagaaacctgaaagaacaca |
132 |
Q |
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|||||||||||||| ||| |||||| |||||||| |||| | | ||||||||| | | ||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
30511132 |
ttagaagctcccatttgtctctatcgttgtttttgactcagtctctatgaagaaaga-aattaaaagttatagggaagaagagaaacctgaaagaacact |
30511230 |
T |
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| Q |
133 |
ttgtagtccatccagaaagttggatactgcaataattggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatata |
232 |
Q |
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| T |
30511231 |
ttgtattccatccagaaagttggatactgcaataataggcaacataattgctacatatttgacaacttcttcttcattgctataagcatatccccatata |
30511330 |
T |
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| Q |
233 |
ttgcgaa |
239 |
Q |
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||||||| |
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| T |
30511331 |
ttgcgaa |
30511337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 30483551 - 30483678
Alignment:
| Q |
116 |
aaacctgaaagaacacattgtagtccatccagaaagttggatactgcaataattggcaacatagttgctacatatttgacaacttcttcttcattgctat |
215 |
Q |
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||||||||||||||| ||| | ||||| || |||| |||||| |||| |||||||| ||||||||||||||| || || ||||||||||||||||||| |
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| T |
30483551 |
aaacctgaaagaacagcttgcatgccatctagtaagtgggatacggcaagaattggcatcatagttgctacataatttaccacttcttcttcattgctat |
30483650 |
T |
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| Q |
216 |
aagcgtatcccaatatattgcgaactag |
243 |
Q |
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| T |
30483651 |
aagcgtagccccataaattacgaactag |
30483678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 30501554 - 30501636
Alignment:
| Q |
157 |
tactgcaataattggcaacatagttgctacatatttgacaacttcttcttcattgctataagcgtatcccaatatattgcgaa |
239 |
Q |
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|||||||| || ||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
30501554 |
tactgcaagaagtggcatcatatttgctacatatttgaccacttcttcttcattgctataagcatatccccatatattgcgaa |
30501636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 30475659 - 30475736
Alignment:
| Q |
124 |
aagaacacattgtagtccatccagaaagttggatactgcaataattggcaacatagttgctacatatttgacaacttc |
201 |
Q |
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|||||||| ||||||| ||||||||||| ||||||||||| |||||| |||||| |||||| | |||||||||||| |
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| T |
30475659 |
aagaacactttgtagtgaatccagaaagtaggatactgcaagaattggtaacataattgctatttgtttgacaacttc |
30475736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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