View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20081_high_3 (Length: 368)
Name: NF20081_high_3
Description: NF20081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20081_high_3 |
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| [»] scaffold0386 (2 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 2217 - 1975
Alignment:
| Q |
10 |
gaagaatataaccaaatgtaaaaacaaggatggaaaagattaaaaatattattgtgaatttacatg--tttaccaagttcactacaagttcaattgagta |
107 |
Q |
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| T |
2217 |
gaagaaaataaccaaatgtaaaaacaaggatggaaaaaattaaaaatattattgtgaatttacctgagtttaccaagttcactacaagttcaattgagta |
2118 |
T |
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| Q |
108 |
aattcagtttcgtttcagagtactaaaattaaattttacatctaaatcaactcaaaatcgataaatagacctatggaattgtataattccacaagttaaa |
207 |
Q |
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| T |
2117 |
aattcagtttcatttcagagtactaaaattaaattttacatctaaatcaactcaaaatcgataaatagacctatggaattgtacaattccacaagttaaa |
2018 |
T |
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| Q |
208 |
tcgtgattttaacgacattgttggccgcaagtaaattaggcct |
250 |
Q |
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| T |
2017 |
tcgtgattttaacgacattgttggccgcaaataaattaggcct |
1975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 1916 - 1875
Alignment:
| Q |
309 |
ggcctcatagtacattttactcactaatttttctactatacc |
350 |
Q |
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| T |
1916 |
ggcctcatagtacattttactcactaatttttatactatacc |
1875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 74 - 252
Target Start/End: Original strand, 5697056 - 5697233
Alignment:
| Q |
74 |
tgtttaccaagttcactacaagttcaattgagtaaattcagtttcgtttcagagtactaaaattaaattttacatctaaatcaactcaaaatcgataaat |
173 |
Q |
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| T |
5697056 |
tgtttaccaaattcactacaagttcaattgagtaaactc-gtttcatttcaaagaactaaaattaaattttacatctaaatcaactcaaaatcgataaat |
5697154 |
T |
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| Q |
174 |
agacctatggaattgtataattccacaagttaaatcgtgattttaacgacattgttggccgcaagtaaattaggcctcc |
252 |
Q |
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| T |
5697155 |
agacttttggaatcgaacaattccacaagttaaatcatgatgttaacgacatcattggccacaagtaaaataggcctcc |
5697233 |
T |
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