View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20081_high_4 (Length: 360)
Name: NF20081_high_4
Description: NF20081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20081_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 345
Target Start/End: Complemental strand, 2811231 - 2810898
Alignment:
| Q |
12 |
aagcaaaggagactcccaaaccaacaataaagggcaatatcataccagcaactgcaatggacaccgcctttgcaccggtgcgtttcacaatagatatgtc |
111 |
Q |
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| T |
2811231 |
aagcaaaggagactcccaaaccaacaataaagggcaatatcataccagcaactgcaatggacaccgcctttgcaccggtgcgtttcacaatagatatgtc |
2811132 |
T |
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| Q |
112 |
catctctaaaccaattaggaacagaaagtatatcagacctatgtttgccattgtttctaaaaccattgcactttttagtggaaatacaatatttgcaaaa |
211 |
Q |
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| T |
2811131 |
catctctaaaccaattaggaacagaaagtatatcagacctatgtttgccattgtttctaaaaccattgcactttttagtggaaatacaatatttgcaaaa |
2811032 |
T |
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| Q |
212 |
ttttcatgtctaccaagcactgatggccccaagaacaatccaccctgcaaatatcatccaaccattctagtcaattaccaaattataacaaaatatttga |
311 |
Q |
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| T |
2811031 |
ttttcatgtctaccaagcactgatggccccaagaacaatccaccctgcaaatatcatccaaccattctagtcaattaccaaattataacaaaatatttga |
2810932 |
T |
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| Q |
312 |
aataaacaactcaaatagtacatgcagtactttt |
345 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
2810931 |
aataaacaagtcaaatagtacatgcagtactttt |
2810898 |
T |
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