View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20081_high_5 (Length: 349)

Name: NF20081_high_5
Description: NF20081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20081_high_5
NF20081_high_5
[»] chr8 (11 HSPs)
chr8 (12-336)||(11770845-11771187)
chr8 (52-125)||(11784873-11784946)
chr8 (147-224)||(8629488-8629565)
chr8 (52-123)||(11765027-11765098)
chr8 (153-213)||(779033-779093)
chr8 (154-202)||(11183584-11183632)
chr8 (149-196)||(2091797-2091844)
chr8 (143-202)||(30259142-30259201)
chr8 (154-204)||(27119910-27119960)
chr8 (147-225)||(27645936-27646014)
chr8 (77-125)||(11779594-11779642)
[»] chr5 (10 HSPs)
chr5 (124-202)||(13604832-13604910)
chr5 (162-212)||(18700431-18700481)
chr5 (124-202)||(21768180-21768258)
chr5 (124-213)||(18704009-18704097)
chr5 (155-218)||(18286831-18286894)
chr5 (164-202)||(5531083-5531121)
chr5 (153-207)||(7674686-7674740)
chr5 (153-207)||(38766523-38766577)
chr5 (140-177)||(26618198-26618235)
chr5 (155-231)||(4273331-4273407)
[»] chr2 (7 HSPs)
chr2 (124-207)||(44606088-44606171)
chr2 (123-201)||(37034030-37034108)
chr2 (143-202)||(10285888-10285947)
chr2 (183-213)||(7033273-7033303)
chr2 (154-207)||(9878660-9878713)
chr2 (124-205)||(40158727-40158808)
chr2 (154-202)||(43065433-43065481)
[»] chr6 (14 HSPs)
chr6 (154-266)||(2460070-2460182)
chr6 (153-213)||(33832245-33832305)
chr6 (145-202)||(33498649-33498706)
chr6 (154-202)||(20377903-20377951)
chr6 (143-207)||(31624118-31624182)
chr6 (148-207)||(1575928-1575987)
chr6 (124-195)||(4246419-4246490)
chr6 (143-206)||(20368159-20368222)
chr6 (178-225)||(26559199-26559246)
chr6 (154-223)||(7931688-7931757)
chr6 (142-195)||(9327071-9327124)
chr6 (148-207)||(1575783-1575843)
chr6 (162-202)||(1669781-1669821)
chr6 (142-202)||(30863273-30863333)
[»] chr4 (8 HSPs)
chr4 (154-266)||(27123271-27123383)
chr4 (124-203)||(46110212-46110291)
chr4 (154-204)||(20936210-20936260)
chr4 (153-202)||(2996611-2996660)
chr4 (147-204)||(4691880-4691937)
chr4 (154-202)||(3176087-3176135)
chr4 (143-171)||(41265759-41265787)
chr4 (154-206)||(50800009-50800061)
[»] chr3 (13 HSPs)
chr3 (123-195)||(26542545-26542617)
chr3 (147-202)||(24281079-24281134)
chr3 (143-202)||(37273162-37273221)
chr3 (147-202)||(3015826-3015881)
chr3 (156-223)||(34707458-34707525)
chr3 (124-207)||(39602188-39602271)
chr3 (143-202)||(40880931-40880990)
chr3 (153-204)||(41724250-41724301)
chr3 (143-206)||(47132022-47132085)
chr3 (146-204)||(5391910-5391968)
chr3 (153-202)||(34382980-34383029)
chr3 (154-195)||(41452562-41452603)
chr3 (145-233)||(45541601-45541689)
[»] chr1 (11 HSPs)
chr1 (154-232)||(33108575-33108653)
chr1 (154-223)||(17420242-17420311)
chr1 (154-206)||(35669011-35669063)
chr1 (124-206)||(37842334-37842416)
chr1 (124-202)||(38867814-38867892)
chr1 (154-195)||(4868439-4868480)
chr1 (153-206)||(29635385-29635438)
chr1 (154-207)||(45394154-45394207)
chr1 (154-202)||(6262777-6262825)
chr1 (154-206)||(40414001-40414053)
chr1 (156-204)||(42336656-42336704)
[»] chr7 (9 HSPs)
chr7 (124-197)||(44821968-44822041)
chr7 (147-226)||(6601399-6601478)
chr7 (148-207)||(15740389-15740448)
chr7 (147-202)||(46082068-46082123)
chr7 (154-195)||(39771800-39771841)
chr7 (148-207)||(15740533-15740593)
chr7 (146-206)||(19719037-19719097)
chr7 (162-206)||(28520991-28521035)
chr7 (178-206)||(30535626-30535654)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 11771187 - 11770845
Alignment:
Q  12 aagaacctattttagtcccatttacaagagcattgacaaatggaaaacaacctatagatggtgtgttaagaagcccaaatttcctccctccaatctcatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11771187 aagaacctattttagtcccatttacaagagcattgacaaatggaaaacaacctatagatggtgtgttaagaagcccaaatttcctccctccaatctcatg 11771088  T
Q  112 cactccctgaaattttcataagatattattaagaa---cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttt 208  Q
    |||||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11771087 cactccctgaaattttcataagatattattaaaaaaaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttt 11770988  T
Q  209 taaacggtctaacaaatatttatactggtcgataaacttaaagaagtaaatccaaacatgtctttattataacgaaatgaact---------------ta 293  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||    
T  11770987 taaacagtctaacaaatatttatactggtcgataaacttaaagaagtaaatccaaacatgtctttattataacgaaatgaactttaatattaaaaaaata 11770888  T
Q  294 tagaagtaaagtgacttttacatactttgatccaagttgtaat 336  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11770887 tagaagtaaagtgacttttacatactttgatccaagttgtaat 11770845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 11784946 - 11784873
Alignment:
Q  52 tggaaaacaacctatagatggtgtgttaagaagcccaaatttcctccctccaatctcatgcactccctgaaatt 125  Q
    |||||||||||| | |||||||  |||||||| ||||||||||||||||||||||||||| | || ||||||||    
T  11784946 tggaaaacaaccaaaagatggttggttaagaatcccaaatttcctccctccaatctcatgtattctctgaaatt 11784873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 8629488 - 8629565
Alignment:
Q  147 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaa 224  Q
    |||||||| | |||||||||||||| |||   ||| |||||||||||||||||||||||| | ||||||||| |||||    
T  8629488 cttataaatagaagttgaaaacaacttatgatcatgtcataagttgttttcataagttctctcaaacggtctcacaaa 8629565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 11765098 - 11765027
Alignment:
Q  52 tggaaaacaacctatagatggtgtgttaagaagcccaaatttcctccctccaatctcatgcactccctgaaa 123  Q
    |||||||||||| | |||||||  |||||||| ||| ||||||||||| ||||||||||| | |||||||||    
T  11765098 tggaaaacaaccaagagatggttggttaagaatcccgaatttcctcccaccaatctcatgtattccctgaaa 11765027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 779093 - 779033
Alignment:
Q  153 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaac 213  Q
    |||||||| |||||||||| |||  |||| ||||||||||||||| |||||||||| ||||    
T  779093 aaaataagatgaaaacaacttatgaacatgtcataagttgttttcgtaagttctttcaaac 779033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 11183584 - 11183632
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    ||||||| |||||||| | |||||||||||||||||||||||| |||||    
T  11183584 aaataagctgaaaacagcttatagacatatcataagttgtttttataag 11183632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 2091797 - 2091844
Alignment:
Q  149 tataaaaataagttgaaaacaacgtatagacatatcataagttgtttt 196  Q
    |||| |||||||||||||||||| ||| || |||||||||||||||||    
T  2091797 tatagaaataagttgaaaacaacttatggatatatcataagttgtttt 2091844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 30259142 - 30259201
Alignment:
Q  143 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||||||||  ||||||  |||||||||| ||||||||||||||||| ||||| ||||||    
T  30259142 agaacttatggaaataaactgaaaacaacttatagacatatcataagctgtttccataag 30259201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 27119960 - 27119910
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagtt 204  Q
    ||||||| |||||||||| ||||||||| |||| ||| |||||||||||||    
T  27119960 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagtt 27119910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 27645936 - 27646014
Alignment:
Q  147 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaat 225  Q
    |||||| |||||||||||||| | | |||||| || ||||||||||| | |||||| ||| | ||||||||| ||||||    
T  27645936 cttatagaaataagttgaaaatagcttatagatatgtcataagttgtatgcataagctctctcaaacggtcttacaaat 27646014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 11779642 - 11779594
Alignment:
Q  77 ttaagaagcccaaatttcctccctccaatctcatgcactccctgaaatt 125  Q
    ||||||| |||||||||||||||||| |||||||  | |||||||||||    
T  11779642 ttaagaatcccaaatttcctccctcccatctcatatattccctgaaatt 11779594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 13604910 - 13604832
Alignment:
Q  124 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||||||||| |||  | |||| ||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  13604910 ttttcataagttatcttgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataag 13604832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 18700431 - 18700481
Alignment:
Q  162 tgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaa 212  Q
    |||||||||| ||||||||| ||||||||||||| |||||| |||||||||    
T  18700431 tgaaaacaacttatagacatgtcataagttgtttccataagctcttttaaa 18700481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 21768258 - 21768180
Alignment:
Q  124 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||||||||| |||  | |||| ||||  ||||||||||||||||| ||||| ||||| ||||||| ||||||||||||    
T  21768258 ttttcataagttatcttgaagagcttacgaaaataagttgaaaacagcgtatggacatgtcataagctgttttcataag 21768180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 18704097 - 18704009
Alignment:
Q  124 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaac 213  Q
    |||||||||| |||||  |||| |||||  ||||||| |||||||||| ||||||||| | |||||||| ||||||||| ||| ||||||    
T  18704097 ttttcataagctattacaaagatcttatggaaataagctgaaaacaacttatagacatgttataagttg-tttcataagctctcttaaac 18704009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 18286831 - 18286894
Alignment:
Q  155 aataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtct 218  Q
    |||||| | |||||||  |||||| ||||||||||||||||  ||||| |||||||||||||||    
T  18286831 aataagctaaaaacaatttatagatatatcataagttgtttcaataagctcttttaaacggtct 18286894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 5531083 - 5531121
Alignment:
Q  164 aaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  5531083 aaaacaacttatggacatatcataagttgttttcataag 5531121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 7674686 - 7674740
Alignment:
Q  153 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 207  Q
    |||||||| |||||||| | |||| |||| ||||||||||||| |||||||||||    
T  7674686 aaaataagctgaaaacaccttataaacatgtcataagttgtttccataagttctt 7674740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 38766577 - 38766523
Alignment:
Q  153 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 207  Q
    ||||||||| ||||||||| ||| ||| | ||||||||||||| |||||||||||    
T  38766577 aaaataagtcgaaaacaacttatggacgtgtcataagttgtttccataagttctt 38766523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 26618198 - 26618235
Alignment:
Q  140 ttaagaacttataaaaataagttgaaaacaacgtatag 177  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  26618198 ttaagaacttataaaaataagctgaaaacaacttatag 26618235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 4273407 - 4273331
Alignment:
Q  155 aataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaatatttat 231  Q
    ||||||||||||||||| ||||||||  ||||||| ||||| |||| ||||| | ||||  ||| |||||| |||||    
T  4273407 aataagttgaaaacaacttatagacaagtcataagctgtttccataggttctctcaaacaatctcacaaatgtttat 4273331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 44606171 - 44606088
Alignment:
Q  124 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 207  Q
    |||||||||| |||| | ||  |||||| ||||| || |||||||||| ||| ||||| |||||||||||||||||||||||||    
T  44606171 ttttcataagttattctaaaacacttatgaaaatcagctgaaaacaacttatggacatgtcataagttgttttcataagttctt 44606088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 37034030 - 37034108
Alignment:
Q  123 attttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataa 201  Q
    ||||||||||||||||||  ||| |||||| |||||||||||||||||  |||| |||| || |||| ||||| |||||    
T  37034030 attttcataagatattatggagagcttatagaaataagttgaaaacaatttataaacatgtcttaagctgtttccataa 37034108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 10285888 - 10285947
Alignment:
Q  143 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||||||||  |||||||||||||||| | ||| ||||| ||||||||| ||||||||||    
T  10285888 agaacttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataag 10285947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 7033303 - 7033273
Alignment:
Q  183 tcataagttgttttcataagttcttttaaac 213  Q
    |||||||||||||||||||||||||||||||    
T  7033303 tcataagttgttttcataagttcttttaaac 7033273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 9878713 - 9878660
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 207  Q
    |||||||| ||||||||| ||| ||||| ||||||||||||| |||||| ||||    
T  9878713 aaataagtcgaaaacaacttatggacatgtcataagttgtttccataagctctt 9878660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 40158727 - 40158808
Alignment:
Q  124 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttc 205  Q
    |||||||||| |||| |  ||| |||||  || |||| |||||||||| |||| |||| ||||||| |||||||||||||||    
T  40158727 ttttcataagttattctggagagcttatgtaattaagctgaaaacaacttataaacatgtcataagctgttttcataagttc 40158808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 43065481 - 43065433
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    ||||||| |||||||||  ||| ||||| ||||||||||||||||||||    
T  43065481 aaataagctgaaaacaatttatggacatgtcataagttgttttcataag 43065433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 2460182 - 2460070
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaatatttatactggtcgataaacttaaagaa 253  Q
    |||||||||||||||||| || |||||| ||||||||||||| |||||| ||| | |||| |||| |||| || |||| || ||  |||| || ||| ||    
T  2460182 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataa 2460083  T
Q  254 gtaaatccaaaca 266  Q
    || ||||||||||    
T  2460082 gttaatccaaaca 2460070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 33832305 - 33832245
Alignment:
Q  153 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaac 213  Q
    |||||||| | |||||||| |||| |||| |||||||||||||||||||||||| ||||||    
T  33832305 aaaataagctaaaaacaacttataaacatgtcataagttgttttcataagttctcttaaac 33832245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 33498649 - 33498706
Alignment:
Q  145 aacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||||||  ||||||| |||||| ||| ||||||||| ||||||||||||||||||||    
T  33498649 aacttatggaaataagctgaaaataacctatagacatgtcataagttgttttcataag 33498706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 20377951 - 20377903
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||||||  ||||||||| ||||||||| ||||||||||||||||||||    
T  20377951 aaataagccgaaaacaacttatagacatgtcataagttgttttcataag 20377903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 31624118 - 31624182
Alignment:
Q  143 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 207  Q
    |||| |||| ||||||||||||||||| | |||  |||| ||||||| |||||||||||||||||    
T  31624118 agaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttctt 31624182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 1575928 - 1575987
Alignment:
Q  148 ttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 207  Q
    |||| |||||||||| |||||| | |||  |||| |||||||||||||||||||||||||    
T  1575928 ttatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttctt 1575987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 4246419 - 4246490
Alignment:
Q  124 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttt 195  Q
    |||||||||| ||||||  ||| | ||||||||||||||||||||| | ||| ||||| |||| ||||||||    
T  4246419 ttttcataagctattatggagagcatataaaaataagttgaaaacagcttatggacatgtcatgagttgttt 4246490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 20368222 - 20368159
Alignment:
Q  143 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 206  Q
    ||||||||| ||||||||||||||  | | |||  |||| ||||||||||||||||||||||||    
T  20368222 agaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataagttct 20368159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 26559246 - 26559199
Alignment:
Q  178 acatatcataagttgttttcataagttcttttaaacggtctaacaaat 225  Q
    ||||||||||||||||||||||||||||||  |||| |||| ||||||    
T  26559246 acatatcataagttgttttcataagttcttccaaacagtctcacaaat 26559199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 7931757 - 7931688
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaa 223  Q
    ||||||| |||||||||| ||   |||| |||||||||||||||||||| |||| |||| ||||| ||||    
T  7931757 aaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctcttctaaatggtctcacaa 7931688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 9327071 - 9327124
Alignment:
Q  142 aagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttt 195  Q
    ||||||||||  ||||| |||||||| |||  ||||||||||||||||||||||    
T  9327071 aagaacttatggaaatacgttgaaaataactcatagacatatcataagttgttt 9327124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 1575783 - 1575843
Alignment:
Q  148 ttataaaaataagttgaaaacaacgtatagacatat-cataagttgttttcataagttctt 207  Q
    |||| ||||||||||||||||| | ||| ||||| | |||||| |||||||||||||||||    
T  1575783 ttatgaaaataagttgaaaacaccttatggacatgttcataagctgttttcataagttctt 1575843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 1669821 - 1669781
Alignment:
Q  162 tgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||||||| | ||||||||| ||||||||||||||||||||    
T  1669821 tgaaaacagcttatagacatgtcataagttgttttcataag 1669781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 30863273 - 30863333
Alignment:
Q  142 aagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||| |||||| || |||| |||||||||| |||  |||| ||||||||||||||||||||    
T  30863273 aagagcttatagaagtaagctgaaaacaacttatgtacatgtcataagttgttttcataag 30863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 27123383 - 27123271
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaatatttatactggtcgataaacttaaagaa 253  Q
    |||||||||||||||||| || |||||| ||||||||||||| |||||| ||| | |||| |||| |||| || |||| || ||  |||| || ||| ||    
T  27123383 aaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataa 27123284  T
Q  254 gtaaatccaaaca 266  Q
    || ||||||||||    
T  27123283 gttaatccaaaca 27123271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 46110212 - 46110291
Alignment:
Q  124 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagt 203  Q
    |||||||||| ||| ||| ||| |||||| ||||||| |||||||||| |||    ||||||||||||||||||||||||    
T  46110212 ttttcataagctatgattgagagcttatagaaataagctgaaaacaacttatgagtatatcataagttgttttcataagt 46110291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 20936260 - 20936210
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagtt 204  Q
    ||||||| |||||||| | |||  |||||||||||||||||||||||||||    
T  20936260 aaataaggtgaaaacagcttatgaacatatcataagttgttttcataagtt 20936210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 2996611 - 2996660
Alignment:
Q  153 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    ||||||||||||||| | | ||| ||||| ||||||||||||||||||||    
T  2996611 aaaataagttgaaaaaagcttatggacatgtcataagttgttttcataag 2996660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 4691880 - 4691937
Alignment:
Q  147 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagtt 204  Q
    ||||| |||||||| |||||||||| ||| | ||| ||||||||||||| ||||||||    
T  4691880 cttatgaaaataagctgaaaacaacatatgggcatgtcataagttgtttccataagtt 4691937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 3176135 - 3176087
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    ||||||| |||||||||| |||||||||  |||||| ||||||||||||    
T  3176135 aaataagctgaaaacaacttatagacatgacataagatgttttcataag 3176087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 41265787 - 41265759
Alignment:
Q  143 agaacttataaaaataagttgaaaacaac 171  Q
    |||||||||||||||||||||||||||||    
T  41265787 agaacttataaaaataagttgaaaacaac 41265759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 50800061 - 50800009
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 206  Q
    ||||||| |||||||| | ||||||||| ||||||||||||| ||| ||||||    
T  50800061 aaataagctgaaaacagcttatagacatgtcataagttgtttacattagttct 50800009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 26542545 - 26542617
Alignment:
Q  123 attttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttt 195  Q
    ||||||||||| ||||||  |||  ||||  |||||||||||||||||  |||||||||||||||||||||||    
T  26542545 attttcataagctattatggagagtttatggaaataagttgaaaacaagttatagacatatcataagttgttt 26542617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 24281079 - 24281134
Alignment:
Q  147 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    ||||| ||| ||||||||||||||| ||| || |||||||||||||||||||||||    
T  24281079 cttatgaaagtaagttgaaaacaacttatggagatatcataagttgttttcataag 24281134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 37273162 - 37273221
Alignment:
Q  143 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||||||||  |||||||||||||||||| ||| ||||| ||||||||||||| ||||||    
T  37273162 agaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataag 37273221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 3015881 - 3015826
Alignment:
Q  147 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    ||||| |||||||| |||||||| | ||| ||||| ||||||||||||||||||||    
T  3015881 cttattaaaataagatgaaaacatcttatggacatgtcataagttgttttcataag 3015826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 34707525 - 34707458
Alignment:
Q  156 ataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaa 223  Q
    |||||||||||||||| ||| ||||| ||| |||||||||||| ||||||| | |||| |||| ||||    
T  34707525 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaa 34707458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 39602271 - 39602188
Alignment:
Q  124 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 207  Q
    |||||||||| |||  || ||||||||| ||||||||||||||||||  |||  |||| ||||||| ||| |||||||| ||||    
T  39602271 ttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctctt 39602188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 40880990 - 40880931
Alignment:
Q  143 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||| ||||||||||||||| |||||||| ||  | ||| ||||||||||||||||||||    
T  40880990 agaagttataaaaataagtttaaaacaacttacggtcatgtcataagttgttttcataag 40880931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 41724250 - 41724301
Alignment:
Q  153 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataagtt 204  Q
    |||||||| |||||||||| ||| ||||| ||||||||||||| ||||||||    
T  41724250 aaaataagctgaaaacaacttatggacatgtcataagttgtttccataagtt 41724301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 47132022 - 47132085
Alignment:
Q  143 agaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 206  Q
    |||||||||||||||||| ||||||||   ||| || ||  |||||||||||||||||||||||    
T  47132022 agaacttataaaaataagctgaaaacagtttatggatatgacataagttgttttcataagttct 47132085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 5391910 - 5391968
Alignment:
Q  146 acttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagtt 204  Q
    |||||| ||||||||||||||||| | |||  |||| ||||||| ||||||||||||||    
T  5391910 acttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 5391968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 34382980 - 34383029
Alignment:
Q  153 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||||||| |||||||||| ||||||||||||||||  ||||| ||||||    
T  34382980 aaaataagatgaaaacaacttatagacatatcataatctgtttccataag 34383029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 41452562 - 41452603
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttt 195  Q
    ||||||| |||||||| | |||||||||||||||||||||||    
T  41452562 aaataaggtgaaaacagcttatagacatatcataagttgttt 41452603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 45541601 - 45541689
Alignment:
Q  145 aacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaatatttatac 233  Q
    ||||||| | |||||  |||||||| | |||  |||| ||||||| ||||||||||||||||| ||||| |||| |||| | |||||||    
T  45541601 aacttatgagaataacctgaaaacagcttatgaacatgtcataagctgttttcataagttcttctaaacagtcttacaagtgtttatac 45541689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 33108653 - 33108575
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaatatttata 232  Q
    |||||||||||||||||| ||| | |||  ||| |||||||||||||||||||| || ||||||| | || ||||||||    
T  33108653 aaataagttgaaaacaacttatggtcatggcatgagttgttttcataagttcttctatacggtctcataagtatttata 33108575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 17420242 - 17420311
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaa 223  Q
    |||||||||||||||||  ||| ||||| | |||||||||||||||||| ||||  |||| |||||||||    
T  17420242 aaataagttgaaaacaatttatggacatgtaataagttgttttcataagctcttcaaaacagtctaacaa 17420311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 35669011 - 35669063
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 206  Q
    |||||||||||||||||  ||| ||||||||||||| || |||||||||||||    
T  35669011 aaataagttgaaaacaatttatggacatatcataagctgctttcataagttct 35669063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 37842416 - 37842334
Alignment:
Q  124 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 206  Q
    |||||||||| |||  | ||||||||||||||||||| |||||||  | |||  |||| |||| || ||||||||||||||||    
T  37842416 ttttcataagctatcttgaagaacttataaaaataagctgaaaactgcttatgaacatgtcattagatgttttcataagttct 37842334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 38867892 - 38867814
Alignment:
Q  124 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    |||||||||| |||  | |||||||||| |||||||| | ||||||||  || ||||||||||||||| ||| ||||||    
T  38867892 ttttcataagttatcttgaagaacttatgaaaataagctaaaaacaactgatggacatatcataagttatttccataag 38867814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 4868439 - 4868480
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttt 195  Q
    |||||||||||||||||| ||| ||||| |||||||||||||    
T  4868439 aaataagttgaaaacaacttattgacatgtcataagttgttt 4868480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 29635385 - 29635438
Alignment:
Q  153 aaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 206  Q
    |||||||| |||||||||| |||| |||| |||||| |||||||||||| ||||    
T  29635385 aaaataagctgaaaacaacttataaacatgtcataacttgttttcataaattct 29635438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 45394154 - 45394207
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 207  Q
    |||||||||||||||| | ||| ||||| ||||||| ||||||| |||||||||    
T  45394154 aaataagttgaaaacagcttatcgacatctcataagctgttttcttaagttctt 45394207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 6262777 - 6262825
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    ||||||| | |||||||| ||| ||||||||||||||| ||||||||||    
T  6262777 aaataagcttaaaacaacttatggacatatcataagttattttcataag 6262825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 40414053 - 40414001
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 206  Q
    |||||||||||||||||| ||| ||||| |||| ||||| |||| ||||||||    
T  40414053 aaataagttgaaaacaacttatggacatttcatcagttgctttcgtaagttct 40414001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 42336656 - 42336704
Alignment:
Q  156 ataagttgaaaacaacgtatagacatatcataagttgttttcataagtt 204  Q
    |||||| ||||||||| | | ||||| ||||||||||||||||||||||    
T  42336656 ataagtcgaaaacaacttttggacatgtcataagttgttttcataagtt 42336704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 44821968 - 44822041
Alignment:
Q  124 ttttcataagatattattaagaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttc 197  Q
    |||||||||| |||| |  ||||||||| ||||||||||||||||||| ||| ||||| |  ||||||||||||    
T  44821968 ttttcataagctattctggagaacttatgaaaataagttgaaaacaacttattgacattttttaagttgttttc 44822041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 6601399 - 6601478
Alignment:
Q  147 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacggtctaacaaata 226  Q
    ||||| |||||||| ||| || | | ||| ||||| | |||| ||||||||||||||||||| ||||||||| |||||||    
T  6601399 cttatgaaaataagctgagaatagcttatggacattttataatttgttttcataagttctttcaaacggtctcacaaata 6601478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 15740448 - 15740389
Alignment:
Q  148 ttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttctt 207  Q
    |||| |||||||||| |||||| | |||  |||| |||||||||||||||||||||||||    
T  15740448 ttatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttctt 15740389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 46082068 - 46082123
Alignment:
Q  147 cttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataag 202  Q
    ||||| |||||||| |||||||||| ||| | ||| ||||||||||||||||||||    
T  46082068 cttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataag 46082123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 39771800 - 39771841
Alignment:
Q  154 aaataagttgaaaacaacgtatagacatatcataagttgttt 195  Q
    |||||||||||||||| | ||| |||||||||||||||||||    
T  39771800 aaataagttgaaaacagcttatggacatatcataagttgttt 39771841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 15740593 - 15740533
Alignment:
Q  148 ttataaaaataagttgaaaacaacgtatagacatat-cataagttgttttcataagttctt 207  Q
    |||| ||||||||||||||||| | ||| ||||| | |||||| |||||||||||||||||    
T  15740593 ttatgaaaataagttgaaaacaccttatggacatgttcataagctgttttcataagttctt 15740533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 19719037 - 19719097
Alignment:
Q  146 acttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttct 206  Q
    ||||||||| ||||| ||||||||   |||  |||| ||||||||||||||||||||||||    
T  19719037 acttataaagataagctgaaaacagtttatgaacatgtcataagttgttttcataagttct 19719097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 28521035 - 28520991
Alignment:
Q  162 tgaaaacaacgtatagacatatcataagttgttttcataagttct 206  Q
    |||||||| | ||||||||| ||||||||||||| ||||||||||    
T  28521035 tgaaaacagcttatagacatgtcataagttgtttccataagttct 28520991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 30535626 - 30535654
Alignment:
Q  178 acatatcataagttgttttcataagttct 206  Q
    |||||||||||||||||||||||||||||    
T  30535626 acatatcataagttgttttcataagttct 30535654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University