View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20081_high_6 (Length: 347)
Name: NF20081_high_6
Description: NF20081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20081_high_6 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 30304032 - 30303701
Alignment:
| Q |
18 |
aggatgcactcctccta---gagctagatttggcatgtctgctcaattcttcaatctgttcccttgatacttttactattacatttgcttcctggctctg |
114 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304032 |
aggatgcactcctcctactagagctagatttggcatgtctgctcaattcctcaatctgttcccttgatacttttactattacatttgcttcctggctctg |
30303933 |
T |
|
| Q |
115 |
cttatgtctcctatccctaaggcctctcctgtgcggctcttgctcctgctcttctataagcaccctctctatctcctcataattggcctatatttgtaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30303932 |
cttatgtctcctatccctaaggcctctcctgtgcggatcttgctcctgctcttctataagcaccctctctatctcctcataattggcctatatttgtaac |
30303833 |
T |
|
| Q |
215 |
aatatatgcaaggacaagtattataatgactatgttttgataaatgataatggttgaaaatttataccttatactgtatatagtatacaaaataaataaa |
314 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||| ||| |
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| T |
30303832 |
aatatatgcaaggacaagtattataatgactacgttttgataaatgataatggttgaaaatttataccatatactgtatata-caaaagaaataaacaaa |
30303734 |
T |
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| Q |
315 |
tagtgtgttggtatgcttacattaaaggcagcc |
347 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
30303733 |
tagtgtgttggtatgcttacattgaaggcagcc |
30303701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 30314915 - 30314589
Alignment:
| Q |
18 |
aggatgcactcctcctagagctagatttggcatgtctgctcaattcttcaatctgttcccttgatacttttactattacatttgcttcctggctctgctt |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |
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| T |
30314915 |
aggatgcactccttctagagctagatttggcatgtctgctcaattcctcaatctgttcccttgacactttgactattacatctgcttcctggctctgctt |
30314816 |
T |
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| Q |
118 |
atgtctcctatccctaaggcctctcctgtgcggctcttgctcctgctcttctataagcaccctctctatctcctcataattggcctatatttgtaacaat |
217 |
Q |
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|||||||||||||||||||||||||||||| | | |||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30314815 |
atgtctcctatccctaaggcctctcctgtgttg---tggctcttgctcttcaataaggacccgctctatctcctcataattggcctatatttgtaacaat |
30314719 |
T |
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| Q |
218 |
atatgcaaggacaagtattataatgactatgttttgataaatgataatggttgaaaatttataccttatactgtatatagtatacaaaataaataaatag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30314718 |
atatgcaaggacaagtattataatgactatgttttgataaatgataatggttgaaaatttataccttatactgtatatagtatacaaaataaataaatag |
30314619 |
T |
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| Q |
318 |
tgtgttggtatgcttacattaaaggcagcc |
347 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
30314618 |
tgtgttggtatgcttacattaaaggcagcc |
30314589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 30291375 - 30291047
Alignment:
| Q |
18 |
aggatgcactcctcctagagctagatttggcatgtctgctcaattcttcaatctgttcccttgatacttttactattacatttgcttcctggctctgctt |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
30291375 |
aggatgcactccttctagagctagatttggcatgtctgctcaattcctcaatctgttcccttgacactttgactattacatttgcttcctggctctgctt |
30291276 |
T |
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| Q |
118 |
atgtctcctatccctaaggcctctcctgt---gcggctcttgctcctgctcttctataagcaccctctctatctcctcataattggcctatatttgtaac |
214 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
30291275 |
atgtctcctatccctaaggcctctcctgtgtcgtggctcttgctcctgctcttctataagcaccctctctatctcctcgtaattggactgtatttgtaac |
30291176 |
T |
|
| Q |
215 |
aatatatgcaaggacaagtattataatgactatgttttgataaatgataatggttgaaaatttataccttatactgtatatagtatacaaaataaataaa |
314 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||||| |
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| T |
30291175 |
aatatatgcaaggacaggtattataatgactatgttttgataaatgataatggtcgaaaatttatactatata---tatata-tatacaaaataaataaa |
30291080 |
T |
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| Q |
315 |
tagtgtgttggtatgcttacattaaaggcagcc |
347 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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| T |
30291079 |
tagtgtgttggtatgcttacattgaaggcagcc |
30291047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 30298826 - 30298584
Alignment:
| Q |
18 |
aggatgcactcctcctagagctagatttggcatgtctgctcaattcttcaatctgttcccttgatacttttactattacatttgcttcctggctctgctt |
117 |
Q |
| |
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||||| ||||||| || ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |
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| T |
30298826 |
aggatccactccttctggagctagattttgcatgtctgctcaattcctcaatctgttctcttgatactttgactattacatttgaatcctggctctgct- |
30298728 |
T |
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| Q |
118 |
atgtctcctatc---cctaaggcctctcctgtgc---ggctcttgctcctgctcttctataagcaccctctctatctcctcataattggcctatatttgt |
211 |
Q |
| |
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| |||||||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
30298727 |
--gcctcctatctttcctaaggcctctcctgtgttgtggctcttgttcatgctcttctataagcaccctctctatctcctcgtaattggcctgtatttgt |
30298630 |
T |
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| Q |
212 |
aacaatatatgcaaggacaagtattataatgactatgttttgataa |
257 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30298629 |
aacaatatatgcaaggataagtattataatgactatgttttgataa |
30298584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 30286358 - 30286167
Alignment:
| Q |
24 |
cactcctcctagagctagatttggcatgtctgctcaattcttcaatctgttcccttgatacttttactattacatttgcttcctggctctgcttatgtct |
123 |
Q |
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||||||| || |||||||| ||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || || |
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| T |
30286358 |
cactccttctggagctagacttggcatttttgctcagttcttcaatctgttctcttgatacttttactattacatttgcttcctggctctgc---tgcct |
30286262 |
T |
|
| Q |
124 |
cctatc------cctaaggcctctcctg---tgcggctcttgctcctgctcttctataagcaccctctctatctcctcataattggcctatattt |
209 |
Q |
| |
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||| || |||||||||||||||| || |||||||| || | |||||||||||||||||||||||||||||| ||||||| || ||||| |
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| T |
30286261 |
cctttcatccttcctaaggcctctcctgtgttgtggctcttgttcattctcttctataagcaccctctctatctcctcgtaattggactgtattt |
30286167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 347
Target Start/End: Complemental strand, 30298561 - 30298518
Alignment:
| Q |
304 |
aaataaataaatagtgtgttggtatgcttacattaaaggcagcc |
347 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
30298561 |
aaataaataaattctgtgttggtatgcttacattgaaggcagcc |
30298518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 46809682 - 46809603
Alignment:
| Q |
35 |
gagctagatttggcatgtctgctcaattcttcaatctgttcccttgatacttttactattacatttgcttcctggctctg |
114 |
Q |
| |
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||||| |||||||||||||| |||| ||| ||||||||||| ||||| ||||| |||||| |||| ||||| |||||||| |
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| T |
46809682 |
gagcttgatttggcatgtctcctcagttcctcaatctgttctcttgacactttgactattgcattagcttcttggctctg |
46809603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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