View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20081_low_11 (Length: 280)

Name: NF20081_low_11
Description: NF20081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20081_low_11
NF20081_low_11
[»] chr8 (5 HSPs)
chr8 (20-280)||(36934671-36934929)
chr8 (228-280)||(34897086-34897136)
chr8 (228-280)||(24362210-24362260)
chr8 (228-280)||(31236585-31236635)
chr8 (229-280)||(39954288-39954337)
[»] chr7 (10 HSPs)
chr7 (202-280)||(32308121-32308197)
chr7 (228-280)||(19206051-19206101)
chr7 (209-273)||(35297661-35297723)
chr7 (230-278)||(22306534-22306581)
chr7 (202-273)||(26329364-26329433)
chr7 (202-280)||(24339643-24339719)
chr7 (228-280)||(20549792-20549842)
chr7 (228-280)||(21828413-21828463)
chr7 (236-280)||(29787385-29787427)
chr7 (228-280)||(42720898-42720948)
[»] chr1 (18 HSPs)
chr1 (204-275)||(5944287-5944358)
chr1 (219-280)||(6427351-6427410)
chr1 (202-277)||(44482234-44482307)
chr1 (202-280)||(36905998-36906074)
chr1 (228-280)||(9709821-9709871)
chr1 (229-280)||(12443469-12443518)
chr1 (202-280)||(9629882-9629958)
chr1 (202-280)||(25361887-25361963)
chr1 (204-275)||(31694694-31694765)
chr1 (203-280)||(5376483-5376558)
chr1 (236-280)||(398781-398823)
chr1 (201-262)||(6612152-6612213)
chr1 (228-280)||(25098563-25098613)
chr1 (236-280)||(36878462-36878504)
chr1 (228-280)||(39953154-39953204)
chr1 (236-280)||(9033023-9033066)
chr1 (244-280)||(18471299-18471335)
chr1 (202-280)||(34371715-34371790)
[»] chr4 (8 HSPs)
chr4 (202-280)||(22234872-22234949)
chr4 (228-280)||(35723392-35723443)
chr4 (227-280)||(36635325-36635376)
chr4 (236-280)||(8423734-8423776)
chr4 (220-280)||(15029766-15029824)
chr4 (228-280)||(40613451-40613501)
chr4 (229-280)||(22440609-22440658)
chr4 (236-280)||(49431026-49431069)
[»] chr6 (12 HSPs)
chr6 (228-280)||(7265601-7265651)
chr6 (228-280)||(19040353-19040403)
chr6 (228-280)||(30866152-30866202)
chr6 (203-278)||(9617437-9617510)
chr6 (226-280)||(5462687-5462739)
chr6 (219-280)||(7151413-7151472)
chr6 (219-280)||(9025493-9025552)
chr6 (228-280)||(7377980-7378030)
chr6 (228-280)||(9629384-9629434)
chr6 (204-280)||(16766698-16766772)
chr6 (220-280)||(32511666-32511724)
chr6 (228-280)||(7027242-7027293)
[»] chr5 (5 HSPs)
chr5 (204-280)||(3966504-3966578)
chr5 (219-280)||(6471888-6471947)
chr5 (228-280)||(30502396-30502446)
chr5 (228-280)||(30542739-30542789)
chr5 (209-280)||(32766932-32767001)
[»] chr3 (7 HSPs)
chr3 (228-280)||(7928451-7928501)
chr3 (205-280)||(8039820-8039893)
chr3 (228-280)||(40993343-40993394)
chr3 (202-280)||(16192732-16192808)
chr3 (236-280)||(5407263-5407305)
chr3 (219-275)||(25948886-25948940)
chr3 (228-280)||(7948959-7949010)
[»] chr2 (7 HSPs)
chr2 (228-280)||(21616763-21616813)
chr2 (236-275)||(5040738-5040777)
chr2 (230-280)||(28677910-28677958)
chr2 (202-280)||(44860321-44860397)
chr2 (228-280)||(23718027-23718077)
chr2 (228-280)||(24105699-24105749)
chr2 (228-280)||(37411252-37411302)
[»] scaffold0171 (1 HSPs)
scaffold0171 (201-261)||(23529-23589)
[»] scaffold0123 (1 HSPs)
scaffold0123 (228-280)||(44533-44583)
[»] scaffold0019 (1 HSPs)
scaffold0019 (236-280)||(71724-71768)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 36934929 - 36934671
Alignment:
Q  20 ttagcctcaaccaacgttggtgctggtcgccttgtgcttaagcctcaaggctttgctcttcctcattatgcagattcctctaaagttgcttatgtcattc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36934929 ttagcctcaaccaacgttggtgctggtcgccttgtgcttaagcctcaaggctttgctcttcctcattatgcagattcctctaaagttgcttatgtcattc 36934830  T
Q  120 aaggtcagtcactcccatctgtattgttacgaagcacatacacttcttggattagcctgtcccgttgtctgacacgcatcgatcgtgtccgacatcgaaa 219  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36934829 aaggtcagtcactcccatctgtattgttaccaagcactgacacttcttggattagcctgtcccgttgtctgacacgcatcgatcgtgtccgatatcgaaa 36934730  T
Q  220 cgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||||||||||| |||||||||||||||||||||||||  || |||||||||||||||    
T  36934729 cgacgccaacacatataattacaatgaattatgtgattttt--tcgaattattagcggtgt 36934671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 34897136 - 34897086
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  34897136 acacatataattacactgaattatgtga--ttttctcaaattattagcggtgt 34897086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 24362210 - 24362260
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||||  || ||||||||||||||||||||    
T  24362210 acacatataattacactgaattatgtga--ttctctcaaattattagcggtgt 24362260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 31236585 - 31236635
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||||| ||||    
T  31236585 acacatataattacattgaattatgtga--ttttctcaaattattagcagtgt 31236635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 39954288 - 39954337
Alignment:
Q  229 cacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||||| ||||||| | ||||||||||||||  |||||||||||||||||||    
T  39954288 cacatataattacactaaattatgtgatttt--ctcaaattattagcggtgt 39954337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 32308197 - 32308121
Alignment:
Q  202 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||||||| ||| ||| ||||| |  ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  32308197 tcgtgtccaacaccgacacgacactgacacatacaattacactgaattatgtga--ttttctcaaattattagcggtgt 32308121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 19206101 - 19206051
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||| ||||||||||||||  |||||||||||||||||||||||    
T  19206101 acacatataattataatgaattatgtga--ttttctcaaattattagcggtgt 19206051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 35297661 - 35297723
Alignment:
Q  209 cgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattatta 273  Q
    ||||||| | ||||| |||||||||| ||||| ||||||||||||||  ||||||||||||||||    
T  35297661 cgacatcaacacgacaccaacacatataattataatgaattatgtga--ttttctcaaattatta 35297723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 22306581 - 22306534
Alignment:
Q  230 acatacaattacaatgaattatgtgattttttctcaaattattagcggt 278  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  22306581 acatacgattacactgaattatgtgatttttt-tcaaattattagcggt 22306534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 26329364 - 26329433
Alignment:
Q  202 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattatta 273  Q
    ||||||| |||| ||| |||||||| ||||||| ||||||| |||||| ||||  |||||||||||||||||    
T  26329364 tcgtgtctgacaccgacacgacgccgacacatataattacactgaattgtgtg--tttttctcaaattatta 26329433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 24339719 - 24339643
Alignment:
Q  202 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||||||||||| ||| ||||| || |||| |  ||||||| |||||||||||||||||  ||||||||||||| ||||    
T  24339719 tcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttt--tcaaattattagctgtgt 24339643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 20549842 - 20549792
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||| ||||||||  |||||||||||||||||||    
T  20549842 acacatataattacactgaattacgtgatttt--ctcaaattattagcggtgt 20549792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 21828413 - 21828463
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||||||||||||||||| |||||||||  ||||||||||||| || ||||||    
T  21828413 acacatacaattacaatggattatgtga--ttttctcaaattactaacggtgt 21828463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 29787385 - 29787427
Alignment:
Q  236 aattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||    
T  29787385 aattacactgaattatgtgatttt--ctcaaattattagcggtgt 29787427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 42720898 - 42720948
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| | |||||||||||||||  ||||||||||||||||||    
T  42720898 acacatataattacatttaattatgtgattttt--tcaaattattagcggtgt 42720948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 5944358 - 5944287
Alignment:
Q  204 gtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagc 275  Q
    ||||||| |||||| ||||| || |||| || ||||||| |||||||||||||||||| |||||||||||||    
T  5944358 gtgtccgtcatcgacacgacaccgacacttataattacactgaattatgtgattttttttcaaattattagc 5944287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 6427410 - 6427351
Alignment:
Q  219 acgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||| |||||||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  6427410 acgacaccaacacatataattacattgaattatgtga--ttttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 44482307 - 44482234
Alignment:
Q  202 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcgg 277  Q
    |||||||||||| ||| ||||| || ||||||| ||||||| ||||||||||||  |||||||||||||| |||||    
T  44482307 tcgtgtccgacaccgacacgacaccgacacatataattacactgaattatgtga--ttttctcaaattataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 36906074 - 36905998
Alignment:
Q  202 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||||||||  || || ||||||||||||| ||||||  ||||||||||||  |||||||| ||||||||||||||    
T  36906074 tcgtgtccgacactgacacaacgccaacacatataattactctgaattatgtga--ttttctcagattattagcggtgt 36905998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 9709871 - 9709821
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| |||||||| |||||||||||  |||||||||||||||||||||||    
T  9709871 acacatataattacaacgaattatgtga--ttttctcaaattattagcggtgt 9709821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 12443469 - 12443518
Alignment:
Q  229 cacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||||||||||||| ||||||||||||  |||||||||||||||||| ||||    
T  12443469 cacatacaattacactgaattatgtga--ttttctcaaattattagctgtgt 12443518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 9629882 - 9629958
Alignment:
Q  202 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||||||||||||||| ||||| || |||| || ||| ||| |||||||| |||  |||| ||||||||||||||||||    
T  9629882 tcgtgtccgacatcgacacgacaccgacacttataatcacactgaattatatga--ttttatcaaattattagcggtgt 9629958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 25361963 - 25361887
Alignment:
Q  202 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||||||||||| ||| ||||| |  ||||||| ||||||| ||||||||||||  |||||||||||||| || |||||    
T  25361963 tcgtgtccgacaccgacacgacactgacacatataattacactgaattatgtga--ttttctcaaattatcagtggtgt 25361887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 31694694 - 31694765
Alignment:
Q  204 gtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagc 275  Q
    |||||||||| ||| ||||| || |||| |  ||||| | |||||||||||||||||| |||||||||||||    
T  31694694 gtgtccgacaccgacacgacaccgacacttgtaattatactgaattatgtgattttttttcaaattattagc 31694765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 5376483 - 5376558
Alignment:
Q  203 cgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||||||||||| ||||| || |||| |  ||||||| ||||||||||  | |||||| ||||||||||||||||    
T  5376483 cgtgtccgacatcgacacgacaccgacacttttaattacactgaattatgt--tattttcttaaattattagcggtgt 5376558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 398781 - 398823
Alignment:
Q  236 aattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||    
T  398781 aattacactgaattatgtgattttt--tcaaattattagcggtgt 398823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 6612152 - 6612213
Alignment:
Q  201 atcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttc 262  Q
    ||||||||||||||||| ||||| || |||| |  ||||||| |||||||||| ||||||||    
T  6612152 atcgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgtaattttttc 6612213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 25098563 - 25098613
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||| ||||||||    
T  25098563 acacatataattacactgaattatgtga--ttttctcaaattatcagcggtgt 25098613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 36878504 - 36878462
Alignment:
Q  236 aattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||    
T  36878504 aattacactgaattatgtgatttt--ctcaaattattagcggtgt 36878462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 39953154 - 39953204
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||||||||||| | ||||||||||  |||||| ||||||||||||||||    
T  39953154 acacatacaattacactaaattatgtga--ttttctaaaattattagcggtgt 39953204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 9033023 - 9033066
Alignment:
Q  236 aattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| |||||||||||||||||| |||||||||||| |||||    
T  9033023 aattacactgaattatgtgatttttt-tcaaattattagtggtgt 9033066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 18471335 - 18471299
Alignment:
Q  244 tgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  18471335 tgaattatgtgattttttttcaaattattagctgtgt 18471299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 34371790 - 34371715
Alignment:
Q  202 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||| ||||||| | | ||||| || ||||||| ||||||| |||||||||||||||| ||   |||||||||||||||    
T  34371790 tcgtatccgacaccaacacgacaccgacacatataattacactgaattatgtgattttctc---aattattagcggtgt 34371715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 22234872 - 22234949
Alignment:
Q  202 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| |||| ||| ||||| || ||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||    
T  22234872 tcgtgtcagacaccgacacgacaccgacacatagaattacactgaattatgtgatttttt-tcaaatttttagcggtgt 22234949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 35723392 - 35723443
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||| | |||||||||||||||||||||||    
T  35723392 acacatataattacattgaattatgtg-tattttctcaaattattagcggtgt 35723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 36635376 - 36635325
Alignment:
Q  227 aacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||||||| ||||||| ||||||||||||  ||||||||||||||||| |||||    
T  36635376 aacacatataattacactgaattatgtga--ttttctcaaattattagtggtgt 36635325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 8423734 - 8423776
Alignment:
Q  236 aattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||    
T  8423734 aattacactgaattatgtgatttt--ctcaaattattagcggtgt 8423776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 15029824 - 15029766
Alignment:
Q  220 cgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||| |||||||||| ||||||| ||||||||||||| |||  ||||||||||||| ||||    
T  15029824 cgacaccaacacatataattacactgaattatgtgatattt--tcaaattattagcagtgt 15029766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 40613501 - 40613451
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||||  |||||||||| ||||||||||||    
T  40613501 acacatataattacactgaattatgtga--ttttctcaaaatattagcggtgt 40613451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 22440609 - 22440658
Alignment:
Q  229 cacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||||| ||||||| ||||||||||||  |||||||||||||||| ||||||    
T  22440609 cacatataattacactgaattatgtga--ttttctcaaattattaacggtgt 22440658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 49431069 - 49431026
Alignment:
Q  236 aattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| |||||||||||||||||| ||||||||||||| ||||    
T  49431069 aattacactgaattatgtgatttttt-tcaaattattagctgtgt 49431026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 7265601 - 7265651
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  7265601 acacatataattacactgaattatgtga--ttttctcaaattattagcggtgt 7265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 19040403 - 19040353
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  19040403 acacatataattacactgaattatgtga--ttttctcaaattattagcggtgt 19040353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 30866152 - 30866202
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  30866152 acacatataattacattgaattatgtga--ttttctcaaattattagcggtgt 30866202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 9617510 - 9617437
Alignment:
Q  203 cgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggt 278  Q
    ||||||||||| ||  ||||| || ||||||| ||||||| ||||||||||||  |||||||||||||||| ||||    
T  9617510 cgtgtccgacaccgcgacgacaccgacacatataattacattgaattatgtga--ttttctcaaattattaccggt 9617437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 5462739 - 5462687
Alignment:
Q  226 caacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||| ||| ||||||||||||||||||||  |||||||||||||||| ||||||    
T  5462739 caacatatataattacaatgaattatgtga--ttttctcaaattattaacggtgt 5462687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 7151472 - 7151413
Alignment:
Q  219 acgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||| |||||||||| ||||||| | |||||||||||||||  |||||||||||| |||||    
T  7151472 acgacaccaacacatataattacacttaattatgtgattttt--tcaaattattagaggtgt 7151413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 9025493 - 9025552
Alignment:
Q  219 acgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||| || ||||||| ||||||| ||||||||||||  |||||||||||||||||| ||||    
T  9025493 acgacaccgacacatataattacactgaattatgtga--ttttctcaaattattagcagtgt 9025552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 7378030 - 7377980
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||||  |||||||||||| ||||||||||    
T  7378030 acacatataattacattgaattatgtga--ttttctcaaatttttagcggtgt 7377980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 9629434 - 9629384
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||||  ||||||||||||||| |||||||    
T  9629434 acacatataattacattgaattatgtga--ttttctcaaattattggcggtgt 9629384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 16766772 - 16766698
Alignment:
Q  204 gtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||||||||| ||| ||||| || |||| |  ||||||| |||||||||||||||||  ||||||||||||| ||||    
T  16766772 gtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttt--tcaaattattagctgtgt 16766698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 32511666 - 32511724
Alignment:
Q  220 cgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||| ||||||| || ||||||| ||||||||||||  |||||| ||||||||||||||||    
T  32511666 cgacaccaacacttataattacactgaattatgtga--ttttcttaaattattagcggtgt 32511724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 7027293 - 7027242
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||| || |||||    
T  7027293 acacatataattacactgaattatgtgatttttt-tcaaattatcaggggtgt 7027242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 3966578 - 3966504
Alignment:
Q  204 gtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||||||  || ||||| || ||||||| ||||||| |||||| |||||||||  |||||||||||||||||||    
T  3966578 gtgtccgacactgacacgacaccgacacatataattacactgaattgtgtgatttt--ctcaaattattagcggtgt 3966504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 6471888 - 6471947
Alignment:
Q  219 acgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||| || ||||||| ||||||| ||||||||||||  |||||||||||||||||| ||||    
T  6471888 acgacacccacacatataattacactgaattatgtga--ttttctcaaattattagccgtgt 6471947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 30502396 - 30502446
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||| ||||||||  |||||||||||||||||||    
T  30502396 acacatataattacactgaattaagtgatttt--ctcaaattattagcggtgt 30502446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 30542739 - 30542789
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||| ||||||||  |||||||||||||||||||    
T  30542739 acacatataattacactgaattaagtgatttt--ctcaaattattagcggtgt 30542789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 32766932 - 32767001
Alignment:
Q  209 cgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||| ||| ||||| | |||||||| ||||||| |||||| || ||||||  |||||||||||||||||||    
T  32766932 cgacaccgacacgacacaaacacatataattacattgaattgtgcgatttt--ctcaaattattagcggtgt 32767001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 7928501 - 7928451
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| |||||||||||||||||  ||||||||||||||||||    
T  7928501 acacatataattacactgaattatgtgattttt--tcaaattattagcggtgt 7928451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 8039820 - 8039893
Alignment:
Q  205 tgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||||| ||| ||||| || ||||||| ||||||| |||||||| | |||||  |||||||||||||||||||    
T  8039820 tgtccgacaccgacacgacaccgacacatataattacactgaattatataatttt--ctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 40993343 - 40993394
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| |||||||||||||||||| | ||||||||||||||||    
T  40993343 acacatataattacactgaattatgtgatttttt-ttaaattattagcggtgt 40993394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 16192732 - 16192808
Alignment:
Q  202 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| |||| ||| |||||  ||||||||| ||||||| |||||||||| |||||  |||||||||||| ||||||    
T  16192732 tcgtgtctgacaccgacacgacatcaacacatataattacactgaattatgttatttt--ctcaaattattaacggtgt 16192808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 5407263 - 5407305
Alignment:
Q  236 aattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||    
T  5407263 aattacaatgaattatgtga--ttttctcaaatttttagcggtgt 5407305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 25948886 - 25948940
Alignment:
Q  219 acgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagc 275  Q
    ||||| ||||||| || ||||||| |||||||||||||||||  |||||||||||||    
T  25948886 acgacaccaacacttataattacactgaattatgtgattttt--tcaaattattagc 25948940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 7949010 - 7948959
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||||||||||| |||||||||| | ||||||||||| ||||| ||||||    
T  7949010 acacatacaattacattgaattatgtca-tttttctcaaactattatcggtgt 7948959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 21616813 - 21616763
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  21616813 acacatataattacactgaattatgtga--ttttctcaaattattagcggtgt 21616763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 5040777 - 5040738
Alignment:
Q  236 aattacaatgaattatgtgattttttctcaaattattagc 275  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  5040777 aattacattgaattatgtgattttttttcaaattattagc 5040738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 28677958 - 28677910
Alignment:
Q  230 acatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||| ||||||| |||||||||||||||||  ||||||||||||||||||    
T  28677958 acatataattacactgaattatgtgattttt--tcaaattattagcggtgt 28677910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 44860397 - 44860321
Alignment:
Q  202 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    |||||||| ||| | | ||||| || ||||||| ||||||| ||||||||| ||||||  |||||||||||||||||||    
T  44860397 tcgtgtccaacaccaacacgacaccgacacatataattacactgaattatgcgatttt--ctcaaattattagcggtgt 44860321  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 23718077 - 23718027
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| |||||||||||| |||  |||||||||||||||||||    
T  23718077 acacatataattacactgaattatgtgacttt--ctcaaattattagcggtgt 23718027  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 24105749 - 24105699
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| |||||||||||| |||  |||||||||||||||||||    
T  24105749 acacatataattacactgaattatgtgacttt--ctcaaattattagcggtgt 24105699  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 37411252 - 37411302
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||| ||| ||||||||||||||||  |||||||||||||||||||    
T  37411252 acacatataatcacactgaattatgtgatttt--ctcaaattattagcggtgt 37411302  T

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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 23589 - 23529
Alignment:
Q  201 atcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgatttttt 261  Q
    ||||||||||||| ||||||||| |  |||| || ||||||| ||||||||||||||||||    
T  23589 atcgtgtccgacaccgaaacgacactgacacttataattacactgaattatgtgatttttt 23529  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 44533 - 44583
Alignment:
Q  228 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| ||||||| ||||||||||||  |||||||||||| ||||||||||    
T  44533 acacatataattacactgaattatgtga--ttttctcaaatttttagcggtgt 44583  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 71768 - 71724
Alignment:
Q  236 aattacaatgaattatgtgattttttctcaaattattagcggtgt 280  Q
    ||||||| |||||| ||||||||||| ||||||||||||| ||||    
T  71768 aattacactgaattgtgtgattttttttcaaattattagctgtgt 71724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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