View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20081_low_12 (Length: 272)
Name: NF20081_low_12
Description: NF20081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20081_low_12 |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 1425454 - 1425568
Alignment:
| Q |
148 |
tattattattagtcatgtccattaagttagaataacctatatataagtacattatttgtctttgaattatatattcagttttcacagtaaacaacgttaa |
247 |
Q |
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| T |
1425454 |
tattattatcagtcatgtccattaagttagaataacctatatataagtacattatttgtctttgaattatatattcagttttcacattaaacaacgttaa |
1425553 |
T |
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| Q |
248 |
ttagcttcccctttg |
262 |
Q |
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| T |
1425554 |
ttagcttcccctttg |
1425568 |
T |
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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 1424920 - 1425052
Alignment:
| Q |
36 |
taatctagcagatcttctaactaagagactgaacaacaagaatttaaagagaattcctttcaagctg-------------tcattaccagcttgaggtgg |
122 |
Q |
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| T |
1424920 |
taatctagcagatcttctaactaagagactgaacaacaagaatttaaagagaattcctttcaagctggtaataatagatatctttaccagcttgaggtgg |
1425019 |
T |
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| Q |
123 |
agtgttgtaaatagtgaaattttaatattatta |
155 |
Q |
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| T |
1425020 |
agtgttgtaaatagtgaaattttaatattatta |
1425052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 50061170 - 50061227
Alignment:
| Q |
17 |
catatatctcttcccaaagtaatctagcagatcttctaactaagagactgaacaacaa |
74 |
Q |
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| T |
50061170 |
catatatctcttcccaaggcaatcttgcagatcttctaactaagggactgaacaacaa |
50061227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 50061276 - 50061321
Alignment:
| Q |
108 |
accagcttgaggtggagtgttgtaaatagtgaaattttaatattat |
153 |
Q |
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| T |
50061276 |
accagcttgagggggagtgttgtaaatagtgaagttttactattat |
50061321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 52986515 - 52986564
Alignment:
| Q |
111 |
agcttgaggtggagtgttgtaaatagtgaaattttaatattattattagt |
160 |
Q |
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| T |
52986515 |
agcttgagggggagtgttgtaaatagtgaagttttacaattattattagt |
52986564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 18761 - 18813
Alignment:
| Q |
108 |
accagcttgaggtggagtgttgtaaatagtgaaattttaatattattattagt |
160 |
Q |
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| T |
18761 |
accagcttgtgggggagtgttgtaaatattgaagttttactattattattagt |
18813 |
T |
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