View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20081_low_13 (Length: 262)
Name: NF20081_low_13
Description: NF20081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20081_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 20970172 - 20969943
Alignment:
| Q |
15 |
tatgaagaacaagttgaaggtgagctatcacttatcttaatatctagagaatgctgaaaagaaatgattgactcaataagagatttcccttcaaaaaaga |
114 |
Q |
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| T |
20970172 |
tatgaagaacaagttgaaggtgagctatcacttaacttaatatctagagaatgctgaaaagaaatgatcgactcaagaagagatttcccttcaaaaaaga |
20970073 |
T |
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| Q |
115 |
taaattcaaagctgaaactgacaagagtcaagtaagatgatatggatgcaactagctagcgcatcacaagagcgaatgtcctccaaacaagtagaagaag |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |||| |||||||||||||||| |
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| T |
20970072 |
taaattcaaagctgaaactgacaagagtcaagtaagatgatatggatgcaatcagatagcgcatcacaagagtgaatggcctctaaacaagtagaagaag |
20969973 |
T |
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| Q |
215 |
cctgccttcaagaacaagtatatgctacct |
244 |
Q |
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| T |
20969972 |
cctgccttcaagaagaagtatatgctacct |
20969943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 26702103 - 26701994
Alignment:
| Q |
64 |
aatgctgaaaagaaatgattgactcaataagagatttcccttcaaaaaagataaattcaaagctgaaactgacaagagtcaagtaagatgatatggatgc |
163 |
Q |
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||||||||||||||| || | ||||||||||||||||||||| |||||| || ||||| |||||||| |||||||| ||||| |||||||||| | |
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| T |
26702103 |
aatgctgaaaagaaaatatcaaatcaataagagatttcccttcaggaaagatggatccaaaggtgaaactggcaagagtcgagtaatgtgatatggatac |
26702004 |
T |
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| Q |
164 |
aactagctag |
173 |
Q |
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| T |
26702003 |
aacaagctag |
26701994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 26971836 - 26971727
Alignment:
| Q |
64 |
aatgctgaaaagaaatgattgactcaataagagatttcccttcaaaaaagataaattcaaagctgaaactgacaagagtcaagtaagatgatatggatgc |
163 |
Q |
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||||||||||||||| || | ||||||||||||||||||||| |||||| || ||||| |||||||| |||||||| ||||| |||||||||| | |
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| T |
26971836 |
aatgctgaaaagaaaatatcaaatcaataagagatttcccttcaggaaagatggatccaaaggtgaaactggcaagagtcgagtaatgtgatatggatac |
26971737 |
T |
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| Q |
164 |
aactagctag |
173 |
Q |
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||| |||||| |
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| T |
26971736 |
aacaagctag |
26971727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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