View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20081_low_17 (Length: 246)

Name: NF20081_low_17
Description: NF20081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20081_low_17
NF20081_low_17
[»] chr6 (8 HSPs)
chr6 (1-245)||(1453728-1453972)
chr6 (1-245)||(1465420-1465664)
chr6 (112-235)||(1470922-1471045)
chr6 (111-235)||(176263-176387)
chr6 (111-158)||(370783-370830)
chr6 (112-235)||(1459540-1459663)
chr6 (111-168)||(1442106-1442163)
chr6 (111-168)||(7564749-7564806)
[»] chr7 (1 HSPs)
chr7 (25-167)||(3927056-3927198)
[»] chr4 (1 HSPs)
chr4 (112-168)||(55419778-55419834)
[»] chr3 (4 HSPs)
chr3 (113-158)||(2456255-2456300)
chr3 (113-156)||(1438003-1438046)
chr3 (112-158)||(3754606-3754652)
chr3 (113-158)||(771499-771544)
[»] scaffold0044 (1 HSPs)
scaffold0044 (113-164)||(89143-89194)
[»] chr5 (1 HSPs)
chr5 (112-158)||(11081819-11081865)
[»] scaffold0015 (1 HSPs)
scaffold0015 (114-154)||(32330-32370)


Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 1453728 - 1453972
Alignment:
Q  1 acatatacctcataatttaagtcgaagaacacttggccatcctcctcggaaatataaagcagactgaaaaaaccaataccattgtaacaaagttccatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1453728 acatatacctcataatttaagtcgaagaacacttggccatcctcctcggaaatataaagcagactgaaaaaaccaataccattgtaacaaagttccatga 1453827  T
Q  101 acggaatggcgaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtaagcaaggatgcataagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1453828 acggaatggcgaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagca 1453927  T
Q  201 atccctagatactcccaagctcaagtcatgcagagtattatctag 245  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  1453928 atccctagatactcccaagctcaagtcatgcagaggatcatctag 1453972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 1465420 - 1465664
Alignment:
Q  1 acatatacctcataatttaagtcgaagaacacttggccatcctcctcggaaatataaagcagactgaaaaaaccaataccattgtaacaaagttccatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1465420 acatatacctcataatttaagtcgaagaacacttggccatcctcctcggaaatataaagcagactgaaaaaaccaataccattgtaacaaagttccatga 1465519  T
Q  101 acggaatggcgaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtaagcaaggatgcataagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1465520 acggaatggcgaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagca 1465619  T
Q  201 atccctagatactcccaagctcaagtcatgcagagtattatctag 245  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  1465620 atccctagatactcccaagctcaagtcatgcagaggatcatctag 1465664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 1470922 - 1471045
Alignment:
Q  112 aacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtaagcaaggatgcataagcaatccctagata 211  Q
    |||||||||  |||||| ||||||||||||||||  ||||||||||| ||||||||| |    || |  | |||||||||||||||| |||||||||| |    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaa 1471021  T
Q  212 ctcccaagctcaagtcatgcagag 235  Q
    | |||||||| |||| | ||||||    
T  1471022 cccccaagctaaagttacgcagag 1471045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 176387 - 176263
Alignment:
Q  111 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtaagcaaggatgcataagcaatccctagat 210  Q
    |||||||||| ||||||| ||||||||||||||||  ||||||  ||| ||||||||| |    |  | || |||||||| ||||| ||||||||||||     
T  176387 gaacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggcaatccctagaa 176288  T
Q  211 actcccaagctcaagtcatgcagag 235  Q
    || |||||||| |||| ||||||||    
T  176287 acccccaagctgaagttatgcagag 176263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 370783 - 370830
Alignment:
Q  111 gaacaatttattccaagagtctttatttccataatacttcataaccca 158  Q
    |||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  370783 gaacaatttagtccaagaatctttatttccataattcttcataaccca 370830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 1459540 - 1459663
Alignment:
Q  112 aacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtaagcaaggatgcataagcaatccctagata 211  Q
    ||||||||| ||||||| |||||||||||| |||  ||||||||||| ||||||||| |    || |  | |||||||| ||||||| |||||||| | |    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaa 1459639  T
Q  212 ctcccaagctcaagtcatgcagag 235  Q
    | |||||||| |||| ||||||||    
T  1459640 cccccaagctaaagttatgcagag 1459663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 1442106 - 1442163
Alignment:
Q  111 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaa 168  Q
    |||||||||| ||||||| |||||| ||||||||| ||||||||||||  ||||||||    
T  1442106 gaacaatttagtccaagaatctttaattccataatccttcataacccatgtatccaaa 1442163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 7564749 - 7564806
Alignment:
Q  111 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaa 168  Q
    |||||||||| ||||||| || || |||||||||| |||||||||||| |||| ||||    
T  7564749 gaacaatttagtccaagaatccttgtttccataatccttcataacccaaatattcaaa 7564806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 3927198 - 3927056
Alignment:
Q  25 aagaacacttggccatcctcctcggaaatataaagcagactgaaaaaaccaataccattgtaacaaagttccatgaacggaatggcgaacaatttattcc 124  Q
    |||||||||||| |||||||||| ||||||||| |||||  || |||||||| |||||  |||| || ||    | ||||||  |||||||||||| |||    
T  3927198 aagaacacttggtcatcctcctcagaaatataatgcagatcgacaaaaccaaaaccatgataaccaactttggcgtacggaactgcgaacaatttagtcc 3927099  T
Q  125 aagagtctttatttccataatacttcataacccagatatccaa 167  Q
    |||| | |||||||||||||| |||||||||||| ||| ||||    
T  3927098 aagaatttttatttccataatccttcataacccaaatacccaa 3927056  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 55419834 - 55419778
Alignment:
Q  112 aacaatttattccaagagtctttatttccataatacttcataacccagatatccaaa 168  Q
    ||||||||| ||||||| |||||||||||||||  |||||||| |||||||||||||    
T  55419834 aacaatttagtccaagaatctttatttccataaaccttcataagccagatatccaaa 55419778  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 2456300 - 2456255
Alignment:
Q  113 acaatttattccaagagtctttatttccataatacttcataaccca 158  Q
    |||||||| |||||||||||||||||||||| | ||||||||||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataaccca 2456255  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 1438046 - 1438003
Alignment:
Q  113 acaatttattccaagagtctttatttccataatacttcataacc 156  Q
    |||||||| |||||||||||||||||||||| | ||||||||||    
T  1438046 acaatttaatccaagagtctttatttccatattccttcataacc 1438003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 3754652 - 3754606
Alignment:
Q  112 aacaatttattccaagagtctttatttccataatacttcataaccca 158  Q
    ||||||||| ||||||| |||||||||||||| | ||||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataaccca 3754606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 771499 - 771544
Alignment:
Q  113 acaatttattccaagagtctttatttccataatacttcataaccca 158  Q
    |||||||| ||||||||||| |||||||||| | ||||||||||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataaccca 771544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 89194 - 89143
Alignment:
Q  113 acaatttattccaagagtctttatttccataatacttcataacccagatatc 164  Q
    |||||||| ||||||| |||||||||||||| | |||||||||||| |||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaatatc 89143  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 11081865 - 11081819
Alignment:
Q  112 aacaatttattccaagagtctttatttccataatacttcataaccca 158  Q
    ||||||||| ||||||| |||||||||||||| | ||||||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataaccca 11081819  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 32330 - 32370
Alignment:
Q  114 caatttattccaagagtctttatttccataatacttcataa 154  Q
    ||||||| |||||||||||||||||||||| | ||||||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataa 32370  T

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