View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20081_low_20 (Length: 210)
Name: NF20081_low_20
Description: NF20081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20081_low_20 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 4377479 - 4377304
Alignment:
| Q |
16 |
aagaagaagaggagtatattgaacttgttggtgaatagtttgaatgggacgttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgaga |
115 |
Q |
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| T |
4377479 |
aagaagaagaggagtatattgaatttgttggtgaatagtttgaatgggacattctttttgaagtcggttgatgcgtcagatatgatggaatcgcctgaga |
4377380 |
T |
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| Q |
116 |
aattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgttcttcaagttgtgacggataatac |
191 |
Q |
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| T |
4377379 |
aattgtttaagatgatggatgatgttgttgaagaggttggggaagaaaatgttgttcaagttgtaacggataatac |
4377304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 4385052 - 4384877
Alignment:
| Q |
16 |
aagaagaagaggagtatattgaacttgttggtgaatagtttgaatgggacgttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgaga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| |
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| T |
4385052 |
aagaagaagaggagtatattgaacttgttggtgaatagtgtgaatgggacgttctttttaaagtcggttgatgcgtcagatatgttggaatcgtctgaga |
4384953 |
T |
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| Q |
116 |
aattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgttcttcaagttgtgacggataatac |
191 |
Q |
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| T |
4384952 |
aattgtttaagatgatggatgatgttgttgaagaggttggggaagaaaatgttgttcaagttgtcacggataatac |
4384877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 4390162 - 4389987
Alignment:
| Q |
16 |
aagaagaagaggagtatattgaacttgttggtgaatagtttgaatgggacgttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgaga |
115 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |||||||||| ||||||||||||||| |||||| |
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| T |
4390162 |
aagaagaagaggagtatattgaacttgttagtgaatagtgtgaatgggatgttctttttgaagtcggttgatgcgtccgatatgttggaatcgtctgaga |
4390063 |
T |
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| Q |
116 |
aattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgttcttcaagttgtgacggataatac |
191 |
Q |
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| T |
4390062 |
aattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgttgttcaagttgtgacggataatac |
4389987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 4365872 - 4365773
Alignment:
| Q |
67 |
ttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
166 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
4365872 |
ttctttttgaagtctattgatgcgtctgatatgttggaatcgcctgagaaactctttaagatgatggatgacgttgttgaagaggttggggaagaaaatg |
4365773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 4360476 - 4360358
Alignment:
| Q |
67 |
ttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
166 |
Q |
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|||||||||||| | ||||||||||| ||||||||||||||| |||||||| | ||||| ||||||||||| ||||||||||||||||| |||||||||| |
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| T |
4360476 |
ttctttttgaagactattgatgcgtctgatatgttggaatcgtctgagaaactctttaaaatgatggatgacgttgttgaagaggttggggaagaaaatg |
4360377 |
T |
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| Q |
167 |
ttcttcaagttgtgacgga |
185 |
Q |
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| T |
4360376 |
ttgtccacgttgtaacgga |
4360358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 67 - 191
Target Start/End: Original strand, 4414444 - 4414567
Alignment:
| Q |
67 |
ttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
166 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| ||| | ||| | ||||||||||||||||| |||| ||||||||||| |||||||||| |
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| T |
4414444 |
ttctttttgaagtccgttgatgcgtcgaatatgttggaatcacctaacaaactctttaagatgatggatgaaattgtagaagaggttgg-gaagaaaatg |
4414542 |
T |
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| Q |
167 |
ttcttcaagttgtgacggataatac |
191 |
Q |
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|| | ||| ||||||| || ||||| |
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| T |
4414543 |
ttgtccaaattgtgacagacaatac |
4414567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 67 - 191
Target Start/End: Complemental strand, 4370272 - 4370148
Alignment:
| Q |
67 |
ttctttttgaagtcgattgatgcgtcagatatgttggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
166 |
Q |
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|||||||||||||| |||||||| | |||||||||||||||||||| ||| | ||| ||| |||| | |||||||||||||||| |||||||||| |
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| T |
4370272 |
ttctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggttggagaagaaaatg |
4370173 |
T |
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| Q |
167 |
ttcttcaagttgtgacggataatac |
191 |
Q |
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|| | ||| |||||||||| ||||| |
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| T |
4370172 |
ttgtccaaattgtgacggacaatac |
4370148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 5725483 - 5725547
Alignment:
| Q |
121 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgttcttcaagttgtgacgga |
185 |
Q |
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||||||||||||||||| |||||||||| ||||| |||||||||||| | ||| |||||||||| |
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| T |
5725483 |
tttaagatgatggatgacattgttgaagaagttggggaagaaaatgttgtccaaattgtgacgga |
5725547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 245861 - 245814
Alignment:
| Q |
121 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgtt |
168 |
Q |
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||||||||||| |||||||||||||||||| |||| |||||||||||| |
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| T |
245861 |
tttaagatgattgatgatgttgttgaagagattggagaagaaaatgtt |
245814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 244638 - 244685
Alignment:
| Q |
121 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgtt |
168 |
Q |
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||||||||||| ||||||||||||||| || |||| |||||||||||| |
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| T |
244638 |
tttaagatgattgatgatgttgttgaaaagattggagaagaaaatgtt |
244685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 15658701 - 15658748
Alignment:
| Q |
121 |
tttaagatgatggatgatgttgttgaagaggttggtgaagaaaatgtt |
168 |
Q |
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| T |
15658701 |
tttaagatgattgatgatgttgttgaagagattggagaagaaaatgtt |
15658748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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