View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20081_low_3 (Length: 463)

Name: NF20081_low_3
Description: NF20081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20081_low_3
NF20081_low_3
[»] scaffold0027 (3 HSPs)
scaffold0027 (279-442)||(16974-17141)
scaffold0027 (17-167)||(16525-16676)
scaffold0027 (238-287)||(16738-16787)
[»] chr6 (2 HSPs)
chr6 (60-174)||(6919323-6919437)
chr6 (72-174)||(29181484-29181586)
[»] chr7 (2 HSPs)
chr7 (57-173)||(32471262-32471378)
chr7 (11-55)||(32471190-32471234)
[»] chr8 (2 HSPs)
chr8 (60-163)||(9617997-9618100)
chr8 (57-126)||(32848074-32848143)
[»] chr5 (2 HSPs)
chr5 (57-175)||(34272243-34272361)
chr5 (137-177)||(14222522-14222562)
[»] chr3 (1 HSPs)
chr3 (10-53)||(46506028-46506071)


Alignment Details
Target: scaffold0027 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 279 - 442
Target Start/End: Original strand, 16974 - 17141
Alignment:
Q  279 ttcatttatacattgcagctagcattcttaattataaatcaagggttcgttgctaa------atgatgcaaactcaaaatattttttcatgggtatgtag 372  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||| |||||      ||||||||||||  |||||||||||||||||| | |||    
T  16974 ttcatttatacattgcagctagcattcttaattatagatcaagagttcgtggctaatgggtgatgatgcaaact--aaatattttttcatgggtgtatag 17071  T
Q  373 gaaaagaataagaaacaataatttttcgagtatggaagtaagatctcccatatttttgtgggccttttct 442  Q
     |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  17072 aaaaagaataagaaacaataatttttcgagtatggaaataagatcttccatatttttgtgggccttttct 17141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 16525 - 16676
Alignment:
Q  17 caaaggaagagaggatagacttcatcaatattcttcatacctatttacgcacaatccaaactttcttgattttaggattattggccacatttctatttgc 116  Q
    |||||| |||||| |  ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  16525 caaagggagagagtagtgacttcatcaatattctacatacctatttacccacaatccaaactttcttgattttaagattgttggccacatttctatttgc 16624  T
Q  117 ctcaaccaataatgacatgtcaagtgta-ttctctcatatgctattttgaat 167  Q
    ||||||||||||||| |||||||||||| || | ||||||||||||||||||    
T  16625 ctcaaccaataatgatatgtcaagtgtatttttttcatatgctattttgaat 16676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 16738 - 16787
Alignment:
Q  238 taggtgtggtatgataactttatgtttgcagtttttgttgattcatttat 287  Q
    |||||||||||| |||||||||||||||| |||||||||||||| |||||    
T  16738 taggtgtggtataataactttatgtttgcggtttttgttgattcttttat 16787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 6919437 - 6919323
Alignment:
Q  60 tttacgcacaatccaaactttcttgattttaggattattggccacatttctatttgcctcaaccaataatgacatgtcaagtgtattctctcatatgcta 159  Q
    |||| ||||||||||||||||||| ||||||| || | | ||||||| || |||||||||||||||| |||  ||| |||||||||| || |||||||||    
T  6919437 tttatgcacaatccaaactttcttaattttagtatcactagccacatgtccatttgcctcaaccaattatgttatgccaagtgtattttcccatatgcta 6919338  T
Q  160 ttttgaatgataaca 174  Q
    | |||||| ||||||    
T  6919337 tattgaatcataaca 6919323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 29181586 - 29181484
Alignment:
Q  72 ccaaactttcttgattttaggattattggccacatttctatttgcctcaaccaataatgacatgtcaagtgtattctctcatatgctattttgaatgata 171  Q
    ||||||||  ||||||||||||| | | ||||| | |  |||||||||||||| |||||||||| ||||||||||   ||||||||||||||||||| ||    
T  29181586 ccaaacttctttgattttaggatcactagccacttgttcatttgcctcaaccagtaatgacatgccaagtgtatttcttcatatgctattttgaatggta 29181487  T
Q  172 aca 174  Q
    |||    
T  29181486 aca 29181484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 32471262 - 32471378
Alignment:
Q  57 ctatttacgcacaatccaaactttcttgattttaggattattggccacatttctatttgcctcaaccaataatgacatgtcaagtgtattctctcatatg 156  Q
    ||||||| ||||||||||| ||| |||||||||||||| | |  | |||| || |||||||||||||||||||   ||| |||| |||||  |||||||     
T  32471262 ctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatattatgccaagcgtatttcctcatatt 32471361  T
Q  157 ctattttgaatgataac 173  Q
    ||||||||||| |||||    
T  32471362 ctattttgaatcataac 32471378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 32471190 - 32471234
Alignment:
Q  11 gagtagcaaaggaagagaggatagacttcatcaatattcttcata 55  Q
    ||||| |||||| |||||||| ||||||||||||| |||||||||    
T  32471190 gagtaccaaagggagagaggagagacttcatcaattttcttcata 32471234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 9617997 - 9618100
Alignment:
Q  60 tttacgcacaatccaaactttcttgattttaggattattggccacatttctatttgcctcaaccaataatgacatgtcaagtgtattctctcatatgcta 159  Q
    |||| |||||||||||||||  |||||| |||||| | | ||||||| ||  ||||||||||||||| |||| ||||||| ||||||   ||||||||||    
T  9617997 tttatgcacaatccaaacttcattgattctaggatcactagccacatctccctttgcctcaaccaattatgatatgtcaaatgtatttcttcatatgcta 9618096  T
Q  160 tttt 163  Q
    ||||    
T  9618097 tttt 9618100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 32848074 - 32848143
Alignment:
Q  57 ctatttacgcacaatccaaactttcttgattttaggattattggccacatttctatttgcctcaaccaat 126  Q
    ||||||| ||||||||||||||| |||||||||||||| ||  ||||||| |  |||| |||||||||||    
T  32848074 ctatttatgcacaatccaaacttccttgattttaggatcatgagccacatgttcatttacctcaaccaat 32848143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 34272361 - 34272243
Alignment:
Q  57 ctatttacgcacaatccaaactttcttgattttaggattattggccacatttctatttgcctcaaccaataatgacatgtcaagtgtattctctcatatg 156  Q
    ||||||| |||||||| || | | |||||||||||||| | | | ||||| || |||| ||| ||||||| |||  ||| ||| |||||| |||||||||    
T  34272361 ctatttatgcacaatctaagcatccttgattttaggatcactagtcacatgtccatttacctaaaccaattatgttatgccaaatgtattttctcatatg 34272262  T
Q  157 ctattttgaatgataacat 175  Q
    ||||||||||| |||||||    
T  34272261 ctattttgaatcataacat 34272243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 14222522 - 14222562
Alignment:
Q  137 caagtgtattctctcatatgctattttgaatgataacatat 177  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  14222522 caagtgtattctctcctatgctattttgaatcataacatat 14222562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 46506071 - 46506028
Alignment:
Q  10 ggagtagcaaaggaagagaggatagacttcatcaatattcttca 53  Q
    |||||| | ||||||||||||| |||||||||||||||||||||    
T  46506071 ggagtacccaaggaagagaggagagacttcatcaatattcttca 46506028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University