View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20081_low_8 (Length: 295)

Name: NF20081_low_8
Description: NF20081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20081_low_8
NF20081_low_8
[»] chr8 (7 HSPs)
chr8 (9-281)||(2797444-2797715)
chr8 (19-281)||(3145510-3145772)
chr8 (19-281)||(2889090-2889352)
chr8 (37-268)||(2848722-2848953)
chr8 (16-281)||(3160377-3160642)
chr8 (19-281)||(2874416-2874678)
chr8 (157-232)||(4416986-4417061)
[»] chr7 (1 HSPs)
chr7 (173-234)||(43313464-43313525)
[»] chr4 (1 HSPs)
chr4 (173-234)||(34743805-34743866)
[»] chr3 (2 HSPs)
chr3 (173-234)||(21531616-21531677)
chr3 (173-234)||(35167557-35167618)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 2797715 - 2797444
Alignment:
Q  9 agcagagatgccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaa 108  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797715 agcagacataccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaa 2797616  T
Q  109 tttccctatcctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797615 tttccctatcctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcag 2797516  T
Q  209 aatgaacaaggtaattttgtatattactatcaaatgataaatatgaatgtagaggctctaaaagggtggaata 281  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  2797515 aatgaacaaggtaattttgtatattaccatcaaatgataaatatgaatgtagaggctct-aaagggtggaata 2797444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 3145772 - 3145510
Alignment:
Q  19 ccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatc 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||    
T  3145772 ccttaaaatatttatttgcccgttcataatctttcaattccatcaagcagcatgcattgcccagattacaagaaaacctcaagctaacaatttccctatc 3145673  T
Q  119 ctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcagaatgaacaag 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3145672 ctcatcgggaaaggaagtttcatactttataaacttcagagcctgcattacggtttcagtttcagaaaagatacctgatagaacccgcagaatgaacaag 3145573  T
Q  219 gtaattttgtatattactatcaaatgataaatatgaatgtagaggctctaaaagggtggaata 281  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  3145572 gtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaata 3145510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 2889090 - 2889352
Alignment:
Q  19 ccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatc 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||  ||| |||||||||||||||||||  |||||||| |||||||||||||||    
T  2889090 ccttaaaatatttatttgcccgttcataatctttcaattccatcaagcacgatgtattgcccagattacaagaaaacctcaagctaacaatttccctatc 2889189  T
Q  119 ctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcagaatgaacaag 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2889190 ctcatcgggaaaggaagtttcatactttataaacttcagagcctgcattacggtttcagtttcagaaaagatacctgatagaacccgcagaatgaacaag 2889289  T
Q  219 gtaattttgtatattactatcaaatgataaatatgaatgtagaggctctaaaagggtggaata 281  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  2889290 gtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaata 2889352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 37 - 268
Target Start/End: Original strand, 2848722 - 2848953
Alignment:
Q  37 cccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatcctcatcgggaaaggaagt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2848722 cccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatcctcatcgggaaaggaagt 2848821  T
Q  137 atcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatattact 236  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  2848822 atcatactttataaagttcagagcctgcattacggtttcagtttcagaaaagataccggatagaacccgcagaatgaacaaggtaattttgtatattact 2848921  T
Q  237 atcaaatgataaatatgaatgtagaggctcta 268  Q
    |||||||||||||||||| |||||||||||||    
T  2848922 atcaaatgataaatatgagtgtagaggctcta 2848953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 3160642 - 3160377
Alignment:
Q  16 atgccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccct 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||| |||||||||||||  |||||| |||||||||||| |    
T  3160642 atgccttaaaatatttatttgcctgttcataatctttcaattttatcaagcacgatgcattgctcagattacaagaagacctcaacccaacaatttcctt 3160543  T
Q  116 atcctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcagaatgaac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  3160542 atcctcatcgggaaaggaagtatcatactttataaacttcagagcctgtattacggtttcagtttcagaaaagatacctgatagaacctgcagaatgaac 3160443  T
Q  216 aaggtaattttgtatattactatcaaatgataaatatgaatgtagaggctctaaaagggtggaata 281  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  3160442 aaggtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaata 3160377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 2874416 - 2874678
Alignment:
Q  19 ccttaaaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatc 118  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||| |||  |||||||||||||||||||||||  ||||||||| ||||||||| ||||    
T  2874416 ccttcaaatatttatttgaccgttcataatctttcaattccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatc 2874515  T
Q  119 ctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcagaatgaacaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2874516 ctcatcgggaaaggaagtatcatactttataaacttcagagcctgcattacggtttcagtttcagaaaagatacctgatagaacccgcagaatgaacaag 2874615  T
Q  219 gtaattttgtatattactatcaaatgataaatatgaatgtagaggctctaaaagggtggaata 281  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||| || ||||||||||||    
T  2874616 gtaattttgtatattacgatcaaatgataaatatgagcgtagaggctatacaagggtggaata 2874678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 4417061 - 4416986
Alignment:
Q  157 gagcctgcattacagtttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatat 232  Q
    ||||||| |||||||||||||||||||||||||||  ||||||||| | || ||| |||| |||||||||||||||    
T  4417061 gagcctgtattacagtttcagtttcagaaaagatacatgatagaacacacaaaatcaacatggtaattttgtatat 4416986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 43313464 - 43313525
Alignment:
Q  173 ttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatatta 234  Q
    |||||||| |||||| |||  |||||||||| ||| |||||||||| |||||||||||||||    
T  43313464 ttcagtttaagaaaatatacatgatagaaccggcaaaatgaacaagctaattttgtatatta 43313525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 34743866 - 34743805
Alignment:
Q  173 ttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatatta 234  Q
    |||||||| |||||| |||  |||||||||| ||| |||||||||| |||||||||||||||    
T  34743866 ttcagtttaagaaaatatacatgatagaaccggcaaaatgaacaagctaattttgtatatta 34743805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 21531677 - 21531616
Alignment:
Q  173 ttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatatta 234  Q
    |||||||| |||||| |||  |||||||||| ||| |||||||||| |||||||||||||||    
T  21531677 ttcagtttaagaaaatatacatgatagaaccggcaaaatgaacaagctaattttgtatatta 21531616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 35167618 - 35167557
Alignment:
Q  173 ttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatatta 234  Q
    |||||||| |||||| |||  |||||||||| ||| |||||||||| |||||||||||||||    
T  35167618 ttcagtttaagaaaatatacatgatagaaccggcaaaatgaacaagctaattttgtatatta 35167557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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