View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_high_12 (Length: 430)
Name: NF20082_high_12
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 6 - 414
Target Start/End: Complemental strand, 50397071 - 50396661
Alignment:
| Q |
6 |
cataggaaagcccttttccattccagaaagatatcgcttcctggattaagaattctcttcttccatggttcatgattttcttggaaaaccttaaactttt |
105 |
Q |
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| T |
50397071 |
cataggaaagcccttttccattccagaaagatatcgcttcctggatcaagaattctcttcttccatggttcatgattttcttggaaaaccttaaactttt |
50396972 |
T |
|
| Q |
106 |
caaaagttggaaatttgatattcattccattcttatcggtatcaacaatgctactgattttgccttccggattaagaattttctgaatcttgtaaactga |
205 |
Q |
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| T |
50396971 |
caaaagttggaaatttgatattcattccattcttatcagtatcaacaatgctactaattttgccttccggattaagaattttctgaatcttgtaaactga |
50396872 |
T |
|
| Q |
206 |
cattggtttctcaaggttatgctttccatcaatggagaacctgtaaatttttaaaacaactaatcaaatcagtgcaaagttgcattgaaaattgaaagg- |
304 |
Q |
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| T |
50396871 |
cattggtttctcaaggttatgctttccatcaatggagaacctgtaaatttttaaaacaactaatcaaatcagtgcaaagttgcattgaaaattgaaagga |
50396772 |
T |
|
| Q |
305 |
-nnnnnnnngagtgagaaatcaaatagtagtagagaattaacctgactagtttctcatttttgagctccattaattcttaagaagaattattgttgaaat |
403 |
Q |
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| T |
50396771 |
aaaaaaagagagtgagaaatcaaatagtagtagagaattaacctgactagtttctcatttttgagctccattaattcttaagaagaattattgttgaaat |
50396672 |
T |
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| Q |
404 |
gctcacactca |
414 |
Q |
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| T |
50396671 |
gctcacactca |
50396661 |
T |
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