View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_high_15 (Length: 403)
Name: NF20082_high_15
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 43186570 - 43186836
Alignment:
| Q |
1 |
gaatcttaactat-aggaatccacaacactcattttcattccatcttcgatattcactctgactcgttcttcataacataaattcattcattttcattat |
99 |
Q |
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| T |
43186570 |
gaatcttaacttttaggaatccacaacactcattttcattccatcttcgaaattcactctgactcgttcttcataacataaattcattaattttcattat |
43186669 |
T |
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| Q |
100 |
tcatcgccgaaattcatccggactcgttattaaccaatatatttttatactaaaataatcaaacattaaaaaggatcttggactgtgtcttaccatgaga |
199 |
Q |
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| T |
43186670 |
tcatcgcagaaattcatccggactcgttattaaccaatatatttttatactaacataatcaaacattaaaaagcatcttggactgtgtcttaccatgaga |
43186769 |
T |
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| Q |
200 |
aacaaaacattgttatcatacgacccgattaagaatattgttttaactatgttactatattctgatt |
266 |
Q |
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| T |
43186770 |
aacaaaacattgttatcatacgacccgattaagaatattgttttaactatgttactatattctgatt |
43186836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 43187115 - 43187239
Alignment:
| Q |
262 |
tgattatatatagatcacataggtttttaattttcagtttcaacactgaaaatcttccaatcaacggaatagagaagggaatcaagtgtgtttttgattg |
361 |
Q |
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| T |
43187115 |
tgattatatatagatcacataggtttttaattttcagtttcaacactgaaaatcttccgatcaatggaatagagaagggaatcaagtgtgtttttgattg |
43187214 |
T |
|
| Q |
362 |
agtttgaattctcatgactgtgtaa |
386 |
Q |
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| T |
43187215 |
agtttgaattctcatgactgtgtaa |
43187239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 23609323 - 23609360
Alignment:
| Q |
5 |
cttaactataggaatccacaacactcattttcattcca |
42 |
Q |
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| T |
23609323 |
cttaactgtaggattccacaacactcattttcattcca |
23609360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 23622784 - 23622844
Alignment:
| Q |
13 |
taggaatccacaacactcattttcattccatcttcgatattcactctgactcgttcttcat |
73 |
Q |
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|||||||||||| ||||||||||||||||| | ||| ||| ||||||| || |||||||| |
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| T |
23622784 |
taggaatccacatcactcattttcattccaccaccgaaatttactctgaatcattcttcat |
23622844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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