View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_high_16 (Length: 393)
Name: NF20082_high_16
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 30779750 - 30779387
Alignment:
| Q |
11 |
ggagcagagaagagcaatgatcacctctttattgaacatcatcaaagcccgatcgttaaaataagccaatccttcaactactaacctaagctcctaacct |
110 |
Q |
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| T |
30779750 |
ggagtagagaagagcaatgatcacctctttattgaacatcatcaaagcccgatagttaaaataagccaatccttcaactactaacctaagctcctaacct |
30779651 |
T |
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| Q |
111 |
aaccaccgtctcacattaccccctttctaccctaacacaatttccctctccctaatttccaattatttttctctctcatttttcctcaagtctctagctt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30779650 |
aaccaccgtctcacattaccccctttctaccctaacacaatttccctctccctaatttccaattatttttctctctcatttttcctcaagtctctagctt |
30779551 |
T |
|
| Q |
211 |
cctctctgtttctttgcctcaagcaaaagcttaaagttaaaagagaaacataaaaaagctgaggacatccccaaactttgcacacatgcaaattcaccac |
310 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30779550 |
cctctctgtttctttgtctcaagcaaaagcttaaagttaaaagagaaacataaaaaagctgaggacatccccaaactttgcacacatgcaaattcaccac |
30779451 |
T |
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| Q |
311 |
cacccacttttacattacacctctcattcactattcactaccaccaaaacctaaacttcaatca |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30779450 |
cacccacttttacattacacctctcattcactattcactaccaccaaaacctaaacttcaatca |
30779387 |
T |
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