View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20082_high_27 (Length: 305)

Name: NF20082_high_27
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20082_high_27
NF20082_high_27
[»] chr6 (1 HSPs)
chr6 (10-147)||(4915610-4915747)
[»] chr3 (4 HSPs)
chr3 (10-147)||(1505862-1505999)
chr3 (247-289)||(41968336-41968378)
chr3 (247-287)||(39983894-39983934)
chr3 (247-287)||(39984955-39984995)
[»] chr8 (8 HSPs)
chr8 (10-147)||(3011547-3011684)
chr8 (29-147)||(2931102-2931220)
chr8 (11-128)||(2947737-2947854)
chr8 (12-131)||(37796586-37796705)
chr8 (10-75)||(2921735-2921800)
chr8 (247-287)||(6540729-6540769)
chr8 (247-287)||(13255524-13255564)
chr8 (247-287)||(45036314-45036354)
[»] chr2 (9 HSPs)
chr2 (12-62)||(28025584-28025634)
chr2 (247-287)||(4517394-4517434)
chr2 (247-287)||(14684515-14684555)
chr2 (247-287)||(14685576-14685616)
chr2 (247-287)||(21306371-21306411)
chr2 (247-287)||(21307428-21307468)
chr2 (247-287)||(30246417-30246457)
chr2 (247-287)||(40421339-40421379)
chr2 (256-287)||(40422407-40422438)
[»] chr4 (2 HSPs)
chr4 (247-289)||(54937918-54937960)
chr4 (247-289)||(54938978-54939020)
[»] chr1 (4 HSPs)
chr1 (247-289)||(173009-173051)
chr1 (247-287)||(8090192-8090232)
chr1 (247-287)||(27962768-27962808)
chr1 (247-287)||(48907452-48907492)
[»] chr7 (2 HSPs)
chr7 (247-287)||(13077489-13077529)
chr7 (247-287)||(13078550-13078590)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 4915747 - 4915610
Alignment:
Q  10 gaagaagacttttcctgagatattggatgaagttaagcatcaaaagaacatgactctttcttaaagagagagaagccgcacgacacattagctctttccc 109  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4915747 gaagaagacttttcctgagatattggatggagttaagcatcaaaagaacatgactctttcttaaagagagagaagccgcacgacacattagctctttccc 4915648  T
Q  110 aatgaactcacatgcttcctcataatcgaacatcactc 147  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4915647 aatgaactcacatgcttcctcataatcgaacatcactc 4915610  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 1505999 - 1505862
Alignment:
Q  10 gaagaagacttttcctgagatattggatgaagttaagcatcaaaagaacatgactctttcttaaagagagagaagccgcacgacacattagctctttccc 109  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||| |||||| |||||| ||||||| ||| |  |    
T  1505999 gaagaaggcttttcctaagatattggatgaagttaagcatcaaaagaacatgacttcctcttaaagagaaagaagcagcacgagacattagttctcttgc 1505900  T
Q  110 aatgaactcacatgcttcctcataatcgaacatcactc 147  Q
    |||||| ||||||||||||||||||  |||||| ||||    
T  1505899 aatgaagtcacatgcttcctcataactgaacataactc 1505862  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 41968378 - 41968336
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggagag 289  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41968378 gtcagtagtgggaggttaagttttaagaataaataggggagag 41968336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 39983934 - 39983894
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39983934 gtcagtagtgggaggttaagttttaagaataaataggggag 39983894  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 39984995 - 39984955
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39984995 gtcagtagtgggaggttaagttttaagaataaataggggag 39984955  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 3011684 - 3011547
Alignment:
Q  10 gaagaagacttttcctgagatattggatgaagttaagcatcaaaagaacatgactctttcttaaagagagagaagccgcacgacacattagctctttccc 109  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||||  ||||  ||||| |||||| |||| |||||| | ||    
T  3011684 gaagaagacttttcttgagatattggatgaagttaagcatcaaaagaacatcactcctgcttagtgagaatgaagctgcacgagacatgagctctcttcc 3011585  T
Q  110 aatgaactcacatgcttcctcataatcgaacatcactc 147  Q
    ||||||  |||||||||||||| ||| |||||||||||    
T  3011584 aatgaatccacatgcttcctcacaattgaacatcactc 3011547  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 2931102 - 2931220
Alignment:
Q  29 atattggatgaagttaagcatcaaaagaacatgactctttcttaaagagagagaagccgcacgacacattagctctttcccaatgaactcacatgcttcc 128  Q
    |||||||| ||||||||| |||||||||||||||||| | ||||| |||| |||||| |||||| ||||||| ||||| ||||| || ||||||||||||    
T  2931102 atattggacgaagttaagaatcaaaagaacatgactcctacttaatgagaaagaagcagcacgagacattagttcttttccaataaattcacatgcttcc 2931201  T
Q  129 tcataatcgaacatcactc 147  Q
    ||| ||| |||||| ||||    
T  2931202 tcacaattgaacataactc 2931220  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 2947737 - 2947854
Alignment:
Q  11 aagaagacttttcctgagatattggatgaagttaagcatcaaaagaacatgactctttcttaaagagagagaagccgcacgacacattagctctttccca 110  Q
    |||| ||||||||  ||||||||||||||||||||||||| ||||||||||  || |  ||||||||| ||||||||||||| ||||||||||| | |||    
T  2947737 aagacgacttttctggagatattggatgaagttaagcatccaaagaacatggttcctggttaaagagaaagaagccgcacgagacattagctctcttcca 2947836  T
Q  111 atgaactcacatgcttcc 128  Q
    ||||| | |||| |||||    
T  2947837 atgaaataacatacttcc 2947854  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 37796586 - 37796705
Alignment:
Q  12 agaagacttttcctgagatattggatgaagttaagcatcaaaagaacatgactctttcttaaagagagagaagccgcacgacacattagctctttcccaa 111  Q
    ||||||||| ||||||||||||||||||| |||||||||||||| |||||| |||| ||||||| ||  ||||  || ||| |||| || ||| | ||||    
T  37796586 agaagacttctcctgagatattggatgaatttaagcatcaaaaggacatgattcttacttaaagtgaaggaagatgcgcgagacatcagttctcttccaa 37796685  T
Q  112 tgaactcacatgcttcctca 131  Q
    |||| | |||||||||||||    
T  37796686 tgaatttacatgcttcctca 37796705  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 2921735 - 2921800
Alignment:
Q  10 gaagaagacttttcctgagatattggatgaagttaagcatcaaaagaacatgactctttcttaaag 75  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| ||||||| |||| |||||||    
T  2921735 gaagaagacttttactgagatattggatgaagttaagcattaaaataacatgattcttgcttaaag 2921800  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 6540769 - 6540729
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6540769 gtcagtagtgggaggttaagttttaagaataaataggggag 6540729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 13255524 - 13255564
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13255524 gtcagtagtgggaggttaagttttaagaataaataggggag 13255564  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 45036354 - 45036314
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  45036354 gtcagtagtgggaggttaagttttaagaataaataggggag 45036314  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 28025584 - 28025634
Alignment:
Q  12 agaagacttttcctgagatattggatgaagttaagcatcaaaagaacatga 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28025584 agaagacttttcctgagatattggatgaagttaagcatcaaaagaacatga 28025634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 4517434 - 4517394
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4517434 gtcagtagtgggaggttaagttttaagaataaataggggag 4517394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 14684515 - 14684555
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14684515 gtcagtagtgggaggttaagttttaagaataaataggggag 14684555  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 14685576 - 14685616
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14685576 gtcagtagtgggaggttaagttttaagaataaataggggag 14685616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 21306371 - 21306411
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21306371 gtcagtagtgggaggttaagttttaagaataaataggggag 21306411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 21307428 - 21307468
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21307428 gtcagtagtgggaggttaagttttaagaataaataggggag 21307468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 30246417 - 30246457
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30246417 gtcagtagtgggaggttaagttttaagaataaataggggag 30246457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 40421339 - 40421379
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40421339 gtcagtagtgggaggttaagttttaagaataaataggggag 40421379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 287
Target Start/End: Original strand, 40422407 - 40422438
Alignment:
Q  256 gggaggttaagttttaagaataaataggggag 287  Q
    ||||||||||||||||||||||||||||||||    
T  40422407 gggaggttaagttttaagaataaataggggag 40422438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 54937960 - 54937918
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggagag 289  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  54937960 gtcagtagtgggaggttaagttttaagaataaataggggagag 54937918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 54939020 - 54938978
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggagag 289  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  54939020 gtcagtagtgggaggttaagttttaagaataaataggggagag 54938978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 173051 - 173009
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggagag 289  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  173051 gtcagtagtgggaggttaagttttaagaataaataggggagag 173009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 8090232 - 8090192
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8090232 gtcagtagtgggaggttaagttttaagaataaataggggag 8090192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 27962808 - 27962768
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27962808 gtcagtagtgggaggttaagttttaagaataaataggggag 27962768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 48907492 - 48907452
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48907492 gtcagtagtgggaggttaagttttaagaataaataggggag 48907452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 13077489 - 13077529
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13077489 gtcagtagtgggaggttaagttttaagaataaataggggag 13077529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 13078550 - 13078590
Alignment:
Q  247 gtcagtagtgggaggttaagttttaagaataaataggggag 287  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  13078550 gtcagtagtgggaggttaagttttaagaataaattggggag 13078590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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