View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20082_high_29 (Length: 276)

Name: NF20082_high_29
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20082_high_29
NF20082_high_29
[»] chr5 (2 HSPs)
chr5 (148-262)||(8421195-8421309)
chr5 (4-121)||(13863097-13863213)
[»] chr6 (3 HSPs)
chr6 (5-123)||(26011476-26011594)
chr6 (4-123)||(24373818-24373937)
chr6 (4-74)||(24377514-24377586)
[»] scaffold0446 (1 HSPs)
scaffold0446 (4-68)||(10620-10684)
[»] chr4 (2 HSPs)
chr4 (4-68)||(56106981-56107045)
chr4 (4-68)||(56111756-56111820)
[»] chr8 (1 HSPs)
chr8 (4-46)||(1141914-1141956)
[»] chr3 (2 HSPs)
chr3 (5-48)||(54430957-54431000)
chr3 (5-47)||(54431770-54431812)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 8421195 - 8421309
Alignment:
Q  148 attgtaactattcttgtaaaagacattggcttcccttctattactcaatccttccctctattattaaaaatagaaggggtatcatttaaagagaattaat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8421195 attgtaactattcttgtaaaagacattggcttcccttctattactcaatccttccctctattattaataatagaaggggtatcatttaaagagaattaat 8421294  T
Q  248 aaaagtgtagaatta 262  Q
    |||||||||||||||    
T  8421295 aaaagtgtagaatta 8421309  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 13863097 - 13863213
Alignment:
Q  4 aaatgctattgacaaactctctgtcaaactctttttaacacactcccatatatgaagccacatcacccctttttgatagtggtctaccgaatcaccggtt 103  Q
    |||||||||||| ||||| | |||||||||| |||||| ||||||||||| || ||||||| ||||||| ||||||||||||||||||||||||||  ||    
T  13863097 aaatgctattgaaaaactatatgtcaaactccttttaatacactcccatacataaagccacgtcacccc-ttttgatagtggtctaccgaatcacctatt 13863195  T
Q  104 cttcaagttgaaaagaaa 121  Q
    ||||||||||||||||||    
T  13863196 cttcaagttgaaaagaaa 13863213  T

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Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 26011476 - 26011594
Alignment:
Q  5 aatgctattgacaaactctctgtcaaactctttttaacacactcccatatatgaagccacatcacccctttttgatagtggtctaccgaatcaccggttc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  26011476 aatgctattgacaaactctctgtcaaactctttttaacacactcccatatatgaagccacgtcacccttttttgatagtggtctaccgaatcacccgttc 26011575  T
Q  105 ttcaagttgaaaagaaata 123  Q
    |||||||||||||||||||    
T  26011576 ttcaagttgaaaagaaata 26011594  T

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Target: chr6; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 24373818 - 24373937
Alignment:
Q  4 aaatgctattgacaaactctctgtcaaactctttttaacacactcccatatatgaagccacatcacccctttttgatagtggtctaccgaatcaccggtt 103  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24373818 aaatgctatttacacactctctgtcaaactccttttaacacactcccatatatgaagccacgtcacccctttttgatagtggtctaccgaatcaccggtt 24373917  T
Q  104 cttcaagttgaaaagaaata 123  Q
    ||||||||||||||||||||    
T  24373918 cttcaagttgaaaagaaata 24373937  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 24377514 - 24377586
Alignment:
Q  4 aaatgctattgacaaactctctgtcaaactctttttaacacactccc--atatatgaagccacatcacccctt 74  Q
    ||||| |||| ||||||||| ||| |||||| |||||||||||||||  |||||||||||||| |||||||||    
T  24377514 aaatgttatttacaaactctatgttaaactccttttaacacactcccatatatatgaagccacgtcacccctt 24377586  T

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Target: scaffold0446 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 10684 - 10620
Alignment:
Q  4 aaatgctattgacaaactctctgtcaaactctttttaacacactcccatatatgaagccacatca 68  Q
    ||||| ||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||    
T  10684 aaatgttattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacatca 10620  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 56106981 - 56107045
Alignment:
Q  4 aaatgctattgacaaactctctgtcaaactctttttaacacactcccatatatgaagccacatca 68  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | | || ||||||||||||||    
T  56106981 aaatgcttttgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacatca 56107045  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 56111820 - 56111756
Alignment:
Q  4 aaatgctattgacaaactctctgtcaaactctttttaacacactcccatatatgaagccacatca 68  Q
    ||||| ||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||    
T  56111820 aaatgttattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacatca 56111756  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 1141956 - 1141914
Alignment:
Q  4 aaatgctattgacaaactctctgtcaaactctttttaacacac 46  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  1141956 aaatgttattgacaaattctctgtcaaactctttttaacacac 1141914  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 54430957 - 54431000
Alignment:
Q  5 aatgctattgacaaactctctgtcaaactctttttaacacactc 48  Q
    |||||||  |||||||||||||||| ||||||||||||||||||    
T  54430957 aatgctaaggacaaactctctgtcacactctttttaacacactc 54431000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 54431812 - 54431770
Alignment:
Q  5 aatgctattgacaaactctctgtcaaactctttttaacacact 47  Q
    |||||||| |||||||||||||||| ||||||||| |||||||    
T  54431812 aatgctatggacaaactctctgtcacactctttttgacacact 54431770  T

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