View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_high_36 (Length: 222)
Name: NF20082_high_36
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 24719411 - 24719225
Alignment:
| Q |
18 |
aggcaacgaatgaactaaaactaaccaacaaaatgtcctctgagttcctgatctggtttctcccatccaccataaggtgtaccaggagtcggtaaaccag |
117 |
Q |
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| T |
24719411 |
aggcaacgaatgaactaaaactaaccaacaaaatgtcctctgagttcctgatctggtttctcccatccaccataaggtgcaccaggagtcggtaaaccag |
24719312 |
T |
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| Q |
118 |
ccatcttcctgaaactccaaatcaacctatcaacatctaacatcaacaaatactccaaattagtcttctgtgcttgagcatggatag |
204 |
Q |
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| T |
24719311 |
ccatcttcctgaaactccaaatcaacctatcaacatctaacatcaacaaatactccaaattagtcttctgtgcttgagcatggatag |
24719225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 35 - 190
Target Start/End: Complemental strand, 24689076 - 24688921
Alignment:
| Q |
35 |
aaactaaccaacaaaatgtcctctgagttcctgatctggtttctcccatccaccataaggtgtaccaggagtcggtaaaccagccatcttcctgaaactc |
134 |
Q |
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|||||||||||||||||| ||||||||||| || |||| ||||||||| ||||| || ||||||||||||||||||||||| |||||||||| ||| |
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| T |
24689076 |
aaactaaccaacaaaatgccctctgagttcagtattaggttcctcccatcctccatacggattaccaggagtcggtaaaccagccgtcttcctgaagctc |
24688977 |
T |
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| Q |
135 |
caaatcaacctatcaacatctaacatcaacaaatactccaaattagtcttctgtgc |
190 |
Q |
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| T |
24688976 |
caaatcaacctatcaacatctaacatcaacaaatactccaaattagtctgctgtgc |
24688921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 24728541 - 24728414
Alignment:
| Q |
77 |
ctcccatccaccataaggtgtaccaggagtcggtaaaccagccatcttcctgaaactccaaatcaacctatcaacatctaacatcaacaaatactccaaa |
176 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |
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| T |
24728541 |
ctcccatcctccatacggtgtaccaggagtcggtaaaccagccgtctttctgaaactccaaatcaagctatcaacatccaacattaacaaatactccaaa |
24728442 |
T |
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| Q |
177 |
ttagtcttctgtgcttgagcatggatag |
204 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
24728441 |
ttagtcttctgtgcttgagcatggatag |
24728414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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