View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20082_low_1 (Length: 601)

Name: NF20082_low_1
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20082_low_1
NF20082_low_1
[»] chr3 (24 HSPs)
chr3 (13-586)||(22615739-22616312)
chr3 (106-498)||(22621500-22621892)
chr3 (107-489)||(22104218-22104600)
chr3 (148-324)||(21936689-21936865)
chr3 (66-324)||(22010285-22010546)
chr3 (66-324)||(22186451-22186712)
chr3 (150-324)||(22178955-22179129)
chr3 (100-324)||(22034014-22034241)
chr3 (100-272)||(22113877-22114052)
chr3 (148-275)||(18967776-18967903)
chr3 (100-226)||(30990130-30990256)
chr3 (169-324)||(21945190-21945348)
chr3 (424-498)||(22657652-22657726)
chr3 (169-324)||(22657826-22657981)
chr3 (391-489)||(30989894-30989992)
chr3 (425-489)||(18967574-18967638)
chr3 (425-489)||(22179230-22179294)
chr3 (246-324)||(30990047-30990125)
chr3 (389-485)||(21945401-21945497)
chr3 (389-489)||(22034294-22034394)
chr3 (426-489)||(22186802-22186865)
chr3 (141-327)||(22648915-22649102)
chr3 (425-489)||(21936966-21937030)
chr3 (437-489)||(22114910-22114962)
[»] chr1 (5 HSPs)
chr1 (65-324)||(34988679-34988938)
chr1 (148-324)||(34979705-34979881)
chr1 (148-324)||(34975047-34975223)
chr1 (439-495)||(34979996-34980052)
chr1 (457-495)||(34989071-34989109)
[»] chr7 (4 HSPs)
chr7 (100-206)||(873413-873519)
chr7 (100-206)||(1234690-1234796)
chr7 (460-489)||(873151-873180)
chr7 (460-489)||(1234428-1234457)
[»] chr8 (1 HSPs)
chr8 (456-489)||(27294439-27294472)


Alignment Details
Target: chr3 (Bit Score: 562; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 13 - 586
Target Start/End: Complemental strand, 22616312 - 22615739
Alignment:
Q  13 aaaatcttcatctaaccaaaaattcaaaactgcaaaagtgagaggttgactgcaatggctgaaatggctgtgagtttggctattcagcaactgcttccac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22616312 aaaatcttcatctaaccaaaaattcaaaactgcaaaagtgagaggttgactgcaatggctgaaatggctgtgagtttggctattcagcaactgcttccac 22616213  T
Q  113 tgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccga 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22616212 tgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgcatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccga 22616113  T
Q  213 aaaaagagctgcagttgaaggagacaacgtccgtgaaggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtatagaagatatcatagat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22616112 aaaaagagctgcagttgaaggagacaacgtccgtgaaggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtatagaagatatcatagat 22616013  T
Q  313 gaatatatgatctatgaaccacgaaaacctcgtcatcccaaatatccagattcactccataagattgttcaattgatcaaaactttgatccctcgccatc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22616012 gaatatatgatctatgaaccacgaaaacctcgtcatcccaaatatccagattcactccataagattgttcaattgatcaaaactttgatccctcgccatc 22615913  T
Q  413 gaattgggtcaaagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaaatccaacctcaagaatcaagtgg 512  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615912 gaattgggtcaaagattcaagaagttaagtcgtctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaaatccaacctcaagaatcaagtgg 22615813  T
Q  513 aatacaaaatgctaaatggtatgaccctcgattggatactcttcacatggaggaaattgacgttgtgggatttc 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22615812 aatacaaaatgctaaatggtatgaccctcgattggatactcttcacatggaggaaattgacgttgtgggatttc 22615739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 106 - 498
Target Start/End: Complemental strand, 22621892 - 22621500
Alignment:
Q  106 cttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaagg 205  Q
    |||||| |||||||| ||||||||| ||||||    ||||| ||||| ||||||| | |||| |||||||||||||||||||||||||| ||||||||||    
T  22621892 cttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaagg 22621793  T
Q  206 acgccgaaaaaagagctgcagttgaaggagacaacgtccgtgaaggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtatagaagatat 305  Q
    | || || | ||||||||||| ||||| ||| |||    ||||||| ||||||| ||||||||| || || | || |  | | ||||| |||||||| ||    
T  22621792 atgctgatagaagagctgcaggtgaagaagataacactagtgaaggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacat 22621693  T
Q  306 catagatgaatatatgatctatgaaccacgaaaacctcgtcatcccaaatatccagattcactccataagattgttcaattgatcaaaactttgatccct 405  Q
    ||| ||||| ||||||||| |||    || | | |||||| |||     | |   | || ||||||||| |||  ||| ||  |||||||| ||||||||    
T  22621692 cattgatgattatatgatccatgtgagacaacagcctcgtaatcttgggtgtatggctttactccataatattagtcacttagtcaaaactatgatccct 22621593  T
Q  406 cgccatcgaattgggtcaaagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaaatccaacct 498  Q
    ||||||||||| | ||| ||||||| ||   |||||||||||||   |  ||||||||||||||||||||| |||||||||||||||||||||    
T  22621592 cgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaaggaaagaagtgaaaggtatggcttccaaatccaacct 22621500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 107 - 489
Target Start/End: Original strand, 22104218 - 22104600
Alignment:
Q  107 ttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaagga 206  Q
    ||||| |||||||| | ||||||||  || |  ||||| | ||||||||||||| | || | |||||||||||||||||||||||||| ||||| || ||    
T  22104218 ttccattgttaagggatgaagccaagctgttgagaggcgttcacaaggaatttgcagaccttaaagatgaacttgaaagcatccaagccttcctcaaaga 22104317  T
Q  207 cgccgaaaaaagagctgcagttgaaggagacaacgtccgtgaaggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtatagaagatatc 306  Q
     || || | ||||||||||| ||| || ||||||    ||||||| ||||||| ||||||||||||  | |  | || ||||||||| ||||||||||||    
T  22104318 tgctgatagaagagctgcagctgatggggacaacactagtgaaggagtcaaaacatgggtgaagcaacttagggtagcagcttttcgcatagaagatatc 22104417  T
Q  307 atagatgaatatatgatctatgaaccacgaaaacctcgtcatcccaaatatccagattcactccataagattgttcaattgatcaaaactttgatccctc 406  Q
    || ||||| ||||||||| ||| |  ||   | |||||| ||||   || |  || |  |||  ||||||||| ||| ||  |||||||| ||| |||||    
T  22104418 attgatgagtatatgatccatgtaggacagcagcctcgtgatcctggatgtgtagctatacttgataagattgctcacttactcaaaactatgacccctc 22104517  T
Q  407 gccatcgaattgggtcaaagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 489  Q
    |||||||||| |   |  |||||| ||| ||||||||||||||| ||  ||||||||||||||||||| ||||||||||||||    
T  22104518 gccatcgaatagcagctgagattcaagatgttaagtcatctgttcgtgggatcaaggaaagaagtgaacgatatggcttccaa 22104600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 148 - 324
Target Start/End: Original strand, 21936689 - 21936865
Alignment:
Q  148 cacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaacgtccgtg 247  Q
    ||||||||||||| | |||| |||||||||||||||||||||||||| ||||||||||| || || | ||||||||||| ||| ||||| |||    |||    
T  21936689 cacaaggaatttggagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcagctgatggagagaacaatagtg 21936788  T
Q  248 aaggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtatagaagatatcatagatgaatatatgatc 324  Q
    |||| || ||||  |||||||||||| | |  | || ||||||| | |||||||||||||| |||||||||||||||    
T  21936789 aaggagttaaaacttgggtgaagcagcttagggaagcagctttttgcatagaagatatcattgatgaatatatgatc 21936865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 66 - 324
Target Start/End: Original strand, 22010285 - 22010546
Alignment:
Q  66 aatggctgaaatggctgtgagtttggctattcagcaactgcttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatac 165  Q
    |||||| ||||||| ||||  ||| | |||| | ||||| |||||| |||||||| ||||| ||||  || |  ||||||| |||||||| |||| | ||    
T  22010285 aatggccgaaatggttgtgtctttagttattgaccaactacttccagtgttaagggaagaaaccaagctgttgagaggcattcacaaggagtttgcaaac 22010384  T
Q  166 atcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgc---agttgaaggagacaacgtccgtgaaggggtcaaaatat 262  Q
    || |||| |||||| |||||||| ||||||||||| ||||| || || |||||||| ||   || |||||||||||||    ||||||| ||||||||||    
T  22010385 attaaagctgaactggaaagcattcaagcattcctgaaggatgctgataaaagagcagcaggagctgaaggagacaactcaagtgaaggagtcaaaatat 22010484  T
Q  263 gggtgaagcaggtgataggagtagcttttcgtatagaagatatcatagatgaatatatgatc 324  Q
    ||||||||||  | |  | || ||||||||  |||||||||||||| ||||| ||| |||||    
T  22010485 gggtgaagcaacttagggaagcagcttttcacatagaagatatcattgatgattatttgatc 22010546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 66 - 324
Target Start/End: Original strand, 22186451 - 22186712
Alignment:
Q  66 aatggctgaaatggctgtgagtttggctattcagcaactgcttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatac 165  Q
    |||||| ||||||| ||||  ||| | |||| | ||||| |||||| |||||||| ||||| ||||  || |  ||||||| |||||||| |||| | ||    
T  22186451 aatggccgaaatggttgtgtctttagttattgaccaactacttccagtgttaagggaagaaaccaagctgttgagaggcattcacaaggattttgcaaac 22186550  T
Q  166 atcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgc---agttgaaggagacaacgtccgtgaaggggtcaaaatat 262  Q
    || |||| |||||| |||||||| ||||||||||| ||||| || || |||||||| ||   || |||||||||||||    ||||||| ||||||||||    
T  22186551 attaaagctgaactggaaagcattcaagcattcctgaaggatgctgataaaagagcagcaggagctgaaggagacaactcaagtgaaggagtcaaaatat 22186650  T
Q  263 gggtgaagcaggtgataggagtagcttttcgtatagaagatatcatagatgaatatatgatc 324  Q
    ||||||||||  | |  | || ||||||||  |||||||||||||| ||||| ||| |||||    
T  22186651 gggtgaagcaacttagggaagcagcttttcacatagaagatatcattgatgattatttgatc 22186712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 150 - 324
Target Start/End: Original strand, 22178955 - 22179129
Alignment:
Q  150 caaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaacgtccgtgaa 249  Q
    ||||||||||||| | || ||||||||| |||||||||||||||| ||||| || || || || | ||||||||||| ||| |||||||||    |||||    
T  22178955 caaggaatttgaagatattaaagatgaatttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcagctgatggagacaacactagtgaa 22179054  T
Q  250 ggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtatagaagatatcatagatgaatatatgatc 324  Q
    || ||||||| ||||||||||||  | |  | || ||||||||| |||||||||||||| ||||| ||| |||||    
T  22179055 ggagtcaaaacatgggtgaagcaacttagggtagcagcttttcgcatagaagatatcattgatgattatttgatc 22179129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 100 - 324
Target Start/End: Original strand, 22034014 - 22034241
Alignment:
Q  100 caactgcttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattcc 199  Q
    ||||| ||||||||||||| | ||||||||||  || |  ||||| | |||||||| || | | | || ||||||||||| |||||||| ||||||||||    
T  22034014 caactacttccactgttaacggaagaagccaagctgttgagaggcgttcacaaggagttcgcagagattaaagatgaactggaaagcattcaagcattcc 22034113  T
Q  200 ttaaggacgccgaaaaaagagctgc---agttgaaggagacaacgtccgtgaaggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtat 296  Q
    | ||||| || || |||||||| ||   || |||||||||||||  | ||||||| ||||||||||||||||||||  | |  |  | ||||||||| ||    
T  22034114 tgaaggatgctgataaaagagcagcaggagctgaaggagacaacaccggtgaaggagtcaaaatatgggtgaagcaacttagggaggcagcttttcgcat 22034213  T
Q  297 agaagatatcatagatgaatatatgatc 324  Q
    |||||||||||| ||||| ||| |||||    
T  22034214 agaagatatcattgatgattatttgatc 22034241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 272
Target Start/End: Original strand, 22113877 - 22114052
Alignment:
Q  100 caactgcttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattcc 199  Q
    ||||| ||||||||||||||| ||||||||||  || |  ||||| | |||||||| || | | | || ||||||||||| |||||||| ||||||||||    
T  22113877 caactacttccactgttaagggaagaagccaagctgttgagaggcgttcacaaggagttcgcagagattaaagatgaactggaaagcattcaagcattcc 22113976  T
Q  200 ttaaggacgccgaaaaaagagctgc---agttgaaggagacaacgtccgtgaaggggtcaaaatatgggtgaagca 272  Q
    | ||||| || || |||||||| ||   || ||||| |||||||  | ||||||| ||||||||||||||||||||    
T  22113977 tgaaggatgctgataaaagagcagcaggagctgaagaagacaacaccagtgaaggagtcaaaatatgggtgaagca 22114052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 18967903 - 18967776
Alignment:
Q  148 cacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaacgtccgtg 247  Q
    ||||| ||||||||| |||| ||||||||||||||||| |||||||| || ||| |||| || || |||||||||| || |||||||||||||    | |    
T  18967903 cacaacgaatttgaagacattaaagatgaacttgaaagtatccaagcctttcttcaggatgctgataaaagagctgtagctgaaggagacaacactagcg 18967804  T
Q  248 aaggggtcaaaatatgggtgaagcaggt 275  Q
    |||| || ||||||||| ||||||||||    
T  18967803 aaggagtgaaaatatggttgaagcaggt 18967776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 30990256 - 30990130
Alignment:
Q  100 caactgcttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattcc 199  Q
    ||||| ||||||||||||||| ||||||||||| ||||  ||||  | ||||||||||||  | | || |||||||||||||||||||| ||||| || |    
T  30990256 caactacttccactgttaagggaagaagccaatctgctaagaggtgttcacaaggaattttcagatattaaagatgaacttgaaagcattcaagcctttc 30990157  T
Q  200 ttaaggacgccgaaaaaagagctgcag 226  Q
    |||| || || || |||||||||||||    
T  30990156 ttaaagatgctgataaaagagctgcag 30990130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 324
Target Start/End: Original strand, 21945190 - 21945348
Alignment:
Q  169 aaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcag---ttgaaggagacaacgtccgtgaaggggtcaaaatatggg 265  Q
    |||||||||||||||||||| ||||||||||| ||||| || || |||||||| ||||    ||||||||||| |  | ||||| | |||||||||||||    
T  21945190 aaagatgaacttgaaagcattcaagcattcctcaaggatgctgataaaagagcagcaggaactgaaggagacaccaccagtgaaagagtcaaaatatggg 21945289  T
Q  266 tgaagcaggtgataggagtagcttttcgtatagaagatatcatagatgaatatatgatc 324  Q
    |||||||  | |  |  | ||||||||| |||||||||||||| ||||| ||| |||||    
T  21945290 tgaagcaacttagggtggcagcttttcgcatagaagatatcattgatgattatttgatc 21945348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 424 - 498
Target Start/End: Complemental strand, 22657726 - 22657652
Alignment:
Q  424 aagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaaatccaacct 498  Q
    ||||||| |||  ||||||||| |||||||  |||||| |||||||||||||||||||| |||||||||||||||    
T  22657726 aagattcaagagattaagtcatttgtttgtgggatcaaagaaagaagtgaaagatatggtttccaaatccaacct 22657652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 324
Target Start/End: Complemental strand, 22657981 - 22657826
Alignment:
Q  169 aaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaacgtccgtgaaggggtcaaaatatgggtga 268  Q
    ||||||||||| || || |||| ||| |||||||||||||| || | ||||||| ||| ||| ||||||  |    ||||||| | |||||| |||||||    
T  22657981 aaagatgaactggagagtatccgagccttccttaaggacgctgacagaagagctacagctgagggagacggcacaagtgaaggagccaaaatgtgggtga 22657882  T
Q  269 agcaggtgataggagtagcttttcgtatagaagatatcatagatgaatatatgatc 324  Q
    ||||||| |  | | |||||||||| ||||||||| |||| ||||| |||||||||    
T  22657881 agcaggttagggaaatagcttttcgcatagaagatgtcattgatgattatatgatc 22657826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 391 - 489
Target Start/End: Complemental strand, 30989992 - 30989894
Alignment:
Q  391 aaaactttgatccctcgccatcgaattgggtcaaagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 489  Q
    |||||| |||||||||| | |||||| |  ||  |||||| |||  ||||||| |||||| ||  ||||||||||||||||||||||||||||||||||    
T  30989992 aaaactgtgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaagatatggcttccaa 30989894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 489
Target Start/End: Complemental strand, 18967638 - 18967574
Alignment:
Q  425 agattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 489  Q
    ||||||||||  ||||||||| |||||||  |||||||||||||||||| | |||||||||||||    
T  18967638 agattcgagacattaagtcatatgtttgtcggatcaaggaaagaagtgacaaatatggcttccaa 18967574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 489
Target Start/End: Original strand, 22179230 - 22179294
Alignment:
Q  425 agattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 489  Q
    |||||| |||  |||||||||||||| ||| |||||||||||||||||| | |||||||||||||    
T  22179230 agattcaagacattaagtcatctgttcgtaggatcaaggaaagaagtgataaatatggcttccaa 22179294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 324
Target Start/End: Complemental strand, 30990125 - 30990047
Alignment:
Q  246 tgaaggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtatagaagatatcatagatgaatatatgatc 324  Q
    |||||| ||||||| ||||||||||||||| |  | || ||||||||| |||||||||||||| ||||| ||| |||||    
T  30990125 tgaaggagtcaaaacatgggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatc 30990047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 485
Target Start/End: Original strand, 21945401 - 21945497
Alignment:
Q  389 tcaaaactttgatccctcgccatcgaattgggtcaaagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggctt 485  Q
    |||||||| |||||||||| | |||||| |  ||  |||||| ||| |||||||||| |||| ||  ||||||||||||||||| || |||||||||    
T  21945401 tcaaaactatgatccctcgtcgtcgaatagcatctgagattcaagatgttaagtcatatgttcgtgggatcaaggaaagaagtggaacatatggctt 21945497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 489
Target Start/End: Original strand, 22034294 - 22034394
Alignment:
Q  389 tcaaaactttgatccctcgccatcgaattgggtcaaagattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttcca 488  Q
    |||||||| |||||||||| | |||||| |  ||  |||| | ||| |||||| |||||||| ||  |||||  ||||||||||||||||||||||||||    
T  22034294 tcaaaactatgatccctcgtcgtcgaatagcatctgagatacaagatgttaagacatctgttcgtgggatcacagaaagaagtgaaagatatggcttcca 22034393  T
Q  489 a 489  Q
    |    
T  22034394 a 22034394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 489
Target Start/End: Original strand, 22186802 - 22186865
Alignment:
Q  426 gattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 489  Q
    ||||| ||| |||||||||||||||  |  |||||  |||||||||||||||||||||||||||    
T  22186802 gattcaagatgttaagtcatctgttattgagatcacagaaagaagtgaaagatatggcttccaa 22186865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 327
Target Start/End: Complemental strand, 22649102 - 22648915
Alignment:
Q  141 aggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaac 240  Q
    |||||| ||||| ||||||| | |||| ||||||||||| || | ||||||||| | ||||||||| || || | ||||||||| | ||||| ||||| |    
T  22649102 aggcattcacaacgaatttgcaaacattaaagatgaactggagatcatccaagcctcccttaaggatgctgatagaagagctgccgctgaagaagacagc 22649003  T
Q  241 gtccgtgaaggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtatag-aagatatcatagatgaatatatgatctat 327  Q
         |||||| ||||||   |||||||||||  | | || || |||||| || |||| |||||||||| ||||| ||||||||||||    
T  22649002 aataatgaaggagtcaaatcgtgggtgaagcaacttagagaagcagctttccgcatagaaagatatcattgatgattatatgatctat 22648915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 489
Target Start/End: Original strand, 21936966 - 21937030
Alignment:
Q  425 agattcgagaagttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 489  Q
    |||||| |||  |||||||||||||| ||  |||||||||||||||||| |||||| | ||||||    
T  21936966 agattcaagacattaagtcatctgttcgtgggatcaaggaaagaagtgatagatatagtttccaa 21937030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 489
Target Start/End: Original strand, 22114910 - 22114962
Alignment:
Q  437 ttaagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaa 489  Q
    ||||| |||||||| ||  |||||  |||||||||||||||||||||||||||    
T  22114910 ttaagacatctgttcgtgggatcacagaaagaagtgaaagatatggcttccaa 22114962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 65 - 324
Target Start/End: Original strand, 34988679 - 34988938
Alignment:
Q  65 caatggctgaaatggctgtgagtttggctattcagcaactgcttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgaata 164  Q
    ||||||| |||||||| |||  ||| |||||| |||||||||||||| |||||| | ||||| ||||  | ||   |||  | ||||| ||||||| | |    
T  34988679 caatggcagaaatggcagtgtcttttgctattaagcaactgcttccattgttaacggaagaaaccaaactactgaaaggtgttcacaaagaatttgcaga 34988778  T
Q  165 catcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaacgtccgtgaaggggtcaaaatatgg 264  Q
    ||| ||| ||||||| |||||||||||| | |||||| | || || || | ||||||||||| |||||||||||||     |||||| | |||||| |||    
T  34988779 cattaaatatgaactggaaagcatccaaaccttccttgaagatgctgatagaagagctgcagctgaaggagacaacactactgaaggagccaaaatgtgg 34988878  T
Q  265 gtgaagcaggtgataggagtagcttttcgtatagaagatatcatagatgaatatatgatc 324  Q
    ||||||||||| |  | ||| |||||||||||||||||| |||| ||||| |||||||||    
T  34988879 gtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatc 34988938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 148 - 324
Target Start/End: Original strand, 34979705 - 34979881
Alignment:
Q  148 cacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaacgtccgtg 247  Q
    ||||| ||||||| | |||| ||| ||||||| ||||||||  |||| |||||||| || || || | ||||||||||| |||||||||||||     ||    
T  34979705 cacaaagaatttgcagacattaaatatgaactcgaaagcattgaagccttccttaaagatgctgatagaagagctgcagctgaaggagacaacactactg 34979804  T
Q  248 aaggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtatagaagatatcatagatgaatatatgatc 324  Q
    |||| | ||| || |||||||||||||| |  | |||||||||||||||||||||| |||| ||||| |||||||||    
T  34979805 aaggagccaagatgtgggtgaagcaggttacggaagtagcttttcgtatagaagatgtcattgatgattatatgatc 34979881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 148 - 324
Target Start/End: Original strand, 34975047 - 34975223
Alignment:
Q  148 cacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaacgtccgtg 247  Q
    ||||| ||||||| | |||| ||| ||||||| |||||||| ||||| ||||| || ||  | || | ||||||||||| |||||||||||||     ||    
T  34975047 cacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagattctgatagaagagctgcagctgaaggagacaacactactg 34975146  T
Q  248 aaggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtatagaagatatcatagatgaatatatgatc 324  Q
    |||| | |||||| |||||||||||||| |  | ||| |||||||  ||||||||| |||| ||||| |||||||||    
T  34975147 aaggagccaaaatgtgggtgaagcaggttagggaagtggcttttctcatagaagatgtcattgatgattatatgatc 34975223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 495
Target Start/End: Original strand, 34979996 - 34980052
Alignment:
Q  439 aagtcatctgtttgtatgatcaaggaaagaagtgaaagatatggcttccaaatccaa 495  Q
    ||||||  |||||||  |||||| |||||||||||||||||||| ||||||||||||    
T  34979996 aagtcagttgtttgtgggatcaaagaaagaagtgaaagatatggtttccaaatccaa 34980052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 495
Target Start/End: Original strand, 34989071 - 34989109
Alignment:
Q  457 atcaaggaaagaagtgaaagatatggcttccaaatccaa 495  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  34989071 atcaaagaaagaagtgaaagatatggtttccaaatccaa 34989109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 873519 - 873413
Alignment:
Q  100 caactgcttccactgttaaggaaagaagccaatttgcttg-gaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattc 198  Q
    ||||| |||||||| |||||| ||||||||||  | |||| || | ||||||||||| |||| | |||| ||||||||||| ||||| || |||||||||    
T  873519 caactacttccactattaagggaagaagccaagct-cttgagaagtatccacaaggagtttgcagacattaaagatgaactggaaagtattcaagcattc 873421  T
Q  199 cttaagga 206  Q
    ||||||||    
T  873420 cttaagga 873413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 1234796 - 1234690
Alignment:
Q  100 caactgcttccactgttaaggaaagaagccaatttgcttg-gaggcatccacaaggaatttgaatacatcaaagatgaacttgaaagcatccaagcattc 198  Q
    ||||| |||||||| |||||| ||||||||||  | |||| || | ||||||||||| |||| | |||| ||||||||||| ||||| || |||||||||    
T  1234796 caactacttccactattaagggaagaagccaagct-cttgagaagtatccacaaggagtttgcagacattaaagatgaactggaaagtattcaagcattc 1234698  T
Q  199 cttaagga 206  Q
    ||||||||    
T  1234697 cttaagga 1234690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 489
Target Start/End: Complemental strand, 873180 - 873151
Alignment:
Q  460 aaggaaagaagtgaaagatatggcttccaa 489  Q
    ||||||||||||||||||||||||||||||    
T  873180 aaggaaagaagtgaaagatatggcttccaa 873151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 489
Target Start/End: Complemental strand, 1234457 - 1234428
Alignment:
Q  460 aaggaaagaagtgaaagatatggcttccaa 489  Q
    ||||||||||||||||||||||||||||||    
T  1234457 aaggaaagaagtgaaagatatggcttccaa 1234428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 456 - 489
Target Start/End: Original strand, 27294439 - 27294472
Alignment:
Q  456 gatcaaggaaagaagtgaaagatatggcttccaa 489  Q
    ||||||||||||||||||||||||||||||||||    
T  27294439 gatcaaggaaagaagtgaaagatatggcttccaa 27294472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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