View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_11 (Length: 433)
Name: NF20082_low_11
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 262 - 408
Target Start/End: Original strand, 31297371 - 31297517
Alignment:
| Q |
262 |
agaaactaacatatcatgttaactaataaagaagattaatatactaatcttttcttcgaaagttttggtggacttttgttaagtttttcaaatattcttc |
361 |
Q |
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| T |
31297371 |
agaaactaacatatcatgtgaactaataaagatgattaatatactaatcttttcttcgaaagttttggtggactttgtttaagtttttcaaatattcttc |
31297470 |
T |
|
| Q |
362 |
acttattataatgatacaaataaaaacaaaaatatcaatcataagca |
408 |
Q |
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| T |
31297471 |
acttattataatgatataaataaaaacaaaaatatcaatcataagca |
31297517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 31294343 - 31294266
Alignment:
| Q |
124 |
aaattttctgcatcatttggagaattttttgtatcatgaactttcaaacaatcaaagagatttctatatcatgaatat |
201 |
Q |
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| T |
31294343 |
aaattttctgcatcattgggagaattctttgtatcaagaactttcatataatcaaagacctttttataccatgaatat |
31294266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 262 - 408
Target Start/End: Complemental strand, 1193664 - 1193519
Alignment:
| Q |
262 |
agaaactaacatatcatgttaactaataaagaagattaatatactaatcttttcttcgaaagttttggtggacttttgttaagtttttcaaatattcttc |
361 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
1193664 |
agaaactaacatatcatgtgaactaataaagaagattaatatactaatcttttcttcgaaagttttggtggac-tttgttaaatttttcaaatattcttc |
1193566 |
T |
|
| Q |
362 |
acttattataatgatacaaataaaaacaaaaatatcaatcataagca |
408 |
Q |
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| T |
1193565 |
atttattataatgatacaaataaaaacaaaaatatcaatcataagca |
1193519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 262 - 399
Target Start/End: Original strand, 37119848 - 37119988
Alignment:
| Q |
262 |
agaaactaacatatcatgttaactaataaagaagattaatatactaatcttttcttcgaaagt----tttggtggacttttgttaagtttttcaaat-at |
356 |
Q |
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||||||||||||||||| | |||||||||| || ||||||||||||||| ||| || |||| | |||||||||| ||||||||||||||||||| || |
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| T |
37119848 |
agaaactaacatatcatatgaactaataaaaaaaattaatatactaatccttt-tttgaaatttttgtttggtggac-tttgttaagtttttcaaatcat |
37119945 |
T |
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| Q |
357 |
tcttcacttattataatgatacaaataaaaacaaaaatatcaa |
399 |
Q |
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| T |
37119946 |
tcttcacttataataatgatacaaacaaaaacaaaaatatcaa |
37119988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 37127343 - 37127465
Alignment:
| Q |
274 |
atcatgttaactaataaagaagattaatatactaatcttttcttcgaaagttttggtggacttttgttaagtttttcaaat-attcttcacttattataa |
372 |
Q |
| |
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||||||| |||||||||| || ||||||||| ||||| ||| || |||| || ||||||||||| |||||||||||||||| ||| |||||||||||||| |
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| T |
37127343 |
atcatgtgaactaataaaaaa-attaatatattaatcctttttt-gaaacttatggtggacttt-gttaagtttttcaaatcattattcacttattataa |
37127439 |
T |
|
| Q |
373 |
tgatacaaataaaaacaaaaatatca |
398 |
Q |
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||||||||| |||||||||||||||| |
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| T |
37127440 |
tgatacaaacaaaaacaaaaatatca |
37127465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 26465414 - 26465465
Alignment:
| Q |
30 |
atccatcaaccaaattatcatcatagctaaggtatttttcagtaccacataa |
81 |
Q |
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|||||||||| || |||||||||||||||| |||||||||||| ||||||| |
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| T |
26465414 |
atccatcaactaatttatcatcatagctaaagtatttttcagtgtcacataa |
26465465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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