View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_13 (Length: 429)
Name: NF20082_low_13
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 384
Target Start/End: Original strand, 30478626 - 30479013
Alignment:
| Q |
7 |
aagtgaaatcaacttatataattaagaggagagtttaaggaacttggatacaaaattctt-gtggaggcagatatttaaagcgtaaaatcctcctcagat |
105 |
Q |
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| T |
30478626 |
aagtgaaatcaacttatataattaagaggagagtttaaggaacttgaataccaaattctttgtggaggcagataattaaagcgtaaaatcctcctcagat |
30478725 |
T |
|
| Q |
106 |
aagcttaattcagatattaaaagagataaaattgtgaatagtactttaagaaaatggtggtagtactttagttacggtgtatttcagatcatta----at |
201 |
Q |
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| T |
30478726 |
aagcttaattcagatattaaaagagataaaattgtgaatagtactttaagaaaatggtggtagtactttagttacggtgtatttcagatcattaattaat |
30478825 |
T |
|
| Q |
202 |
taattaatta---cattacatgcatgctgattaatgaactactccaacgagaaaaacgtcggattactgtcaatgaggtctcgttgcttgacatcttgga |
298 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30478826 |
taattaattaattaattacatgcatgctgattaatgaactactccaacgagaaaaacgtcggattactgccaatgaggtctcgttgcttgacatcttgga |
30478925 |
T |
|
| Q |
299 |
gacaggat-cttttttatagatattgttaatgaacgtcattaagaaaaggtaac-aaaatgattattattttcaaaatattaacaaaa |
384 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
30478926 |
gacaggatccttttttatagatattgttaatgaacgtcattaagaaaaggtaacaaaaatgactattattttcaaaatattaacaaaa |
30479013 |
T |
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