View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_18 (Length: 360)
Name: NF20082_low_18
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 39751605 - 39751275
Alignment:
| Q |
19 |
gttattacataacaaaccgtttcattaataatgtagtaactacacataaagaaaaacaaaagaggttatggctatagacatagttattagttagtacaag |
118 |
Q |
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| T |
39751605 |
gttattacataacaaaccgtttcattaataatgtagtaactacacataaagaaaaacaaaagaggttatggctatagacatagttattagttagtacaag |
39751506 |
T |
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| Q |
119 |
aagataattttcacctgaataatccaaatgaagtttgaaagataccagcaaagagtgtggcaagaaaaatgagctttgtataaccaattggatcagtaga |
218 |
Q |
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| T |
39751505 |
aagataattttcacctgaatagtccaaatgaagtttgaaagataccagcaaagagtgtggcaagaaaaatgagctttgtataaccaattggatcagtaga |
39751406 |
T |
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| Q |
219 |
agggtctactaatttttgaaccatcgatgataacagcaacgaaaccacggccacaggaccaattgctatttctcttgatgttcccattacagcgtatata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39751405 |
agggtctactaatttttgaaccatcgatgataacagcaacgaaaccacggccacaggaccaattgctatttctcttgatgttcccattacagcgtatata |
39751306 |
T |
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| Q |
319 |
agcggtggtacaacactcgtatctatttcat |
349 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
39751305 |
agcggtggtacaacactcgtatctatttcat |
39751275 |
T |
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