View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_19 (Length: 348)
Name: NF20082_low_19
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 48576199 - 48575868
Alignment:
| Q |
17 |
atgaatctaagacgatcccagcttttaaagcacaggtatgaacttgcctaccaacacagtagctttcttcaagagaggagcaagccctcaaaacgcttgt |
116 |
Q |
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| T |
48576199 |
atgaatctaagacgatcccagcttttaaagcacaggtatgaacttgcctaccaacacagtagctttcttcaagagaggagcaagccctcaaaacgcttgt |
48576100 |
T |
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| Q |
117 |
aatagtgaattgatccggcaacaggccactccgtaataaatcaatgaacagccttaaggaacactcctttaaaccaattcgagcacaacccgatatcaca |
216 |
Q |
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| T |
48576099 |
aatagtgaattgatccggcaacaggccactccgtaataaatcaatgaacagccttaaggaacactcctctaaaccacttcgagcacaacccgatatcaca |
48576000 |
T |
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| Q |
217 |
gtgttccacgaaattaaatccacttctttcatctgaccgaacatccttcttgcataattaacagaaccagccttaacatacatattaatagcgctattcg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48575999 |
gtgttccacgaaattaaatccacttctttcatctgaccgaacatccttcttgcataattaacagaaccagccttaacatacatattaatagcgctattcg |
48575900 |
T |
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| Q |
317 |
caacagacacaaattgatcccatccgaacctc |
348 |
Q |
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| T |
48575899 |
caacagacacaaattgatcccatccgaacctc |
48575868 |
T |
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