View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20082_low_2 (Length: 595)
Name: NF20082_low_2
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 71 - 581
Target Start/End: Complemental strand, 24235090 - 24234581
Alignment:
| Q |
71 |
agtgtgaagcactaattacattattaatgtattttgggtgttttggataatatttcatttactctaaattttgcaggtgaagcatttcacttgaaattga |
170 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||| | | |||||||||||| |||||||||| |
|
|
| T |
24235090 |
agtgtgaagcactaattacactattaatgtattttgggtgttttggaaaatatttcaatcactctaaattcttccggtgaagcattttctttgaaattga |
24234991 |
T |
|
| Q |
171 |
tcatttttaaagtaaagaagtagaacaaaagtatgttctaatccaagaaataatatatttttaaagataaattcagatgagtccaagagtgagatacgct |
270 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
24234990 |
tcatttttaaagtaaagaagcagaacaaaagtatgttctaaaccaagaaataatatatttttaaaaataaatttacatgagtccaagagtgagatacgct |
24234891 |
T |
|
| Q |
271 |
ttggtacaagcgagagtgcgtaagtgaaggtttaataggccttgagggcgtcacgatgcgaaaccccacaaatgactaggtggtagctcccccgtgtcgt |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
24234890 |
ttggtacaagcgagagtgcgtaagtgaaggtttaataggccttgagggcatcacggtgcgaaaccccacaaatgaccaggtggtagctcccctgtgtcgt |
24234791 |
T |
|
| Q |
371 |
ggtattcgatgcctcacagtgacgatcttgacgtggcactgcaagaactcatgatcggtggtagagtgttccggtaaaaatacatttagtatgaaaagaa |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24234790 |
ggtattcgatgcctcacagtgacgatcttgacgtgacactgcaagaactcatgatcggtggtagagtgttccggtaaaaatacatttagtatgaaaacaa |
24234691 |
T |
|
| Q |
471 |
aagaaaatgtaccaatgagaattttgaagacagaacatgtcctcccgactgctcctctcatatagaatctccatggagcaggaaagagtcacatacatga |
570 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24234690 |
aag-aaatgtaccaatgagaattttgaagacggaacatgtcctcccgattgctcctctcatatagaatctccatggagtaggaaagagtcacatacatga |
24234592 |
T |
|
| Q |
571 |
tgaatataatg |
581 |
Q |
| |
|
||||||||||| |
|
|
| T |
24234591 |
tgaatataatg |
24234581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 178 - 383
Target Start/End: Original strand, 7820579 - 7820780
Alignment:
| Q |
178 |
taaagtaaagaagtagaacaaaagtatgttctaatccaagaaataatatatttttaaagataaattcagatgagtccaagagtgagatacgctttggtac |
277 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||| ||||| ||| |||||||||||||||| ||||||||||| |
|
|
| T |
7820579 |
taaattaaagaagtagaacaaatgtatgttctaaaccaagaaataatagattcttaaaaataaactcacatgagtccaagagtga----cgctttggtac |
7820674 |
T |
|
| Q |
278 |
aagcgagagtgcgtaagtgaaggtttaataggccttgagggcgtcacgatgcgaaaccccacaaatgactaggtggtagctcccccgtgtcgtggtattc |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||||| ||||||||||||| |
|
|
| T |
7820675 |
aagcgagagtgcgtaagtgaaggtttaataggccttgagggcgtcacggtgtgaaaccccacaagtgaccaggtggtagctcccctatgtcgtggtattc |
7820774 |
T |
|
| Q |
378 |
gatgcc |
383 |
Q |
| |
|
|||||| |
|
|
| T |
7820775 |
gatgcc |
7820780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 385 - 581
Target Start/End: Original strand, 7830910 - 7831108
Alignment:
| Q |
385 |
cacagtgacgatcttgacgtggcactgcaagaactcatgatcggtggtagagtgttccggtaaaaatacattta-gtatgaaaagaaaagaaa---atgt |
480 |
Q |
| |
|
|||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
7830910 |
cacagtaacgaacttgacgtgacactgcaagaactcatgatcggtggtagagtgttccggtaaaaatacatttaagtattaaaagaaaagaaagaaatgt |
7831009 |
T |
|
| Q |
481 |
accaatgagaattttgaagacagaacatgtcctcccgactgctcctctcatatagaatctccatggagcaggaaagagtcacatacatgatgaatataat |
580 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
7831010 |
accaatgagaattt-gaa-acggaacatgtcctcccgattgctcctctcatatagaatctccatggtgaaggaaagagtcacatacatgatgaatataat |
7831107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 7820393 - 7820459
Alignment:
| Q |
71 |
agtgtgaagcactaattacattattaatgtattttgggtgttttggataatatttcatttactctaa |
137 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| ||| |||| ||||||||| ||||||||| |
|
|
| T |
7820393 |
agtgtgaagcactaattacactattaatatattttggatgtcatggaaaatatttcaattactctaa |
7820459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 7820479 - 7820562
Alignment:
| Q |
92 |
tattaatgtattttgggtgttttggataatatttcatttactctaaattttgcaggtgaagcatttcac-ttgaaattgatcatt |
175 |
Q |
| |
|
||||| ||||||||||||||||| || |||||| || ||||||| |||| ||| |||||||||||| | ||||||||||||||| |
|
|
| T |
7820479 |
tattagtgtattttgggtgttttagaaaatattgcaattactct-aattatgccggtgaagcatttttctttgaaattgatcatt |
7820562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 7820328 - 7820361
Alignment:
| Q |
16 |
ataataaagctagaaatcatctttttggattaat |
49 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
7820328 |
ataataaaactagaaatcatctttttggattaat |
7820361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University