View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_20 (Length: 342)
Name: NF20082_low_20
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 39076698 - 39076390
Alignment:
| Q |
19 |
ggatcatcatagtcacaagtctcaacaacaaattcaccaagcttctatcttcggtagcaggtttctgtctgatgctttgacaggtttctgtattcctgct |
118 |
Q |
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| T |
39076698 |
ggatcatcataatcacaagtctcaacaacaaattcaccaagcttctatcttcggtagcaggtttctgtctgatgctttgacaggtttctgtattcctgct |
39076599 |
T |
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| Q |
119 |
agaattcaaggtgaggatgagagccatggagttggttccgaaaggccatcctcttcttctaattctcatcactaaccattagtatgaacttcacaatgct |
218 |
Q |
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| T |
39076598 |
agaattcaaggtgaggatgagagccatggagttggttccgaaaggccatcctcttcttctaattctcatcactaaccattagtatgaacttcacaatgct |
39076499 |
T |
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| Q |
219 |
acaatcttccatttctatcaggtactccacaattgccannnnnnnctccttttcttggattagtatttataaccatacaaattctaaattgctttcatgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39076498 |
acaatcttccatttctatcaggtactccacaattgccatttttttctccttttcttggattagtatttataaccatacaaattctaaattgctttcatgt |
39076399 |
T |
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| Q |
319 |
cacgatatt |
327 |
Q |
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||||||||| |
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| T |
39076398 |
cacgatatt |
39076390 |
T |
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