View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_22 (Length: 314)
Name: NF20082_low_22
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_22 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 6284 - 5988
Alignment:
| Q |
1 |
ttattaatcaatcaatattcacgacaaaacaatcaattctaatgaggcaaatttattctgatacaaagtcaaagactaacaatgaggccacccaatatgt |
100 |
Q |
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| T |
6284 |
ttattaatcaatcaatattcacgacaaaacaatcaattctaatgaggcaaatttattctgatacaaagtcaaagactaacaatgaggccacccaatatgt |
6185 |
T |
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| Q |
101 |
atatcaaatagtactaaagtcaagcaaacacatcaagccgaaattttaaataaccatgtataccgaaaataactatacaaaaatagcaacactttcccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6184 |
atatcaaatagtactaaagtcaagcaaacacatcaagccgaaattttaaataaccatgtataccgaaaataactatacaaaaatagcaacacttccccca |
6085 |
T |
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| Q |
201 |
aaagctaaagtctagaccaataagttcatgataaccgcaatgagaacagggaacgtagcaacgagagtagcagctgagcctggtgatggaggagttg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6084 |
aaagctaaagtctagaccaataagttcatgataaccgcaatgagaacagggaacgtagcaacgagagtagtagctgagcctggtgatggaggagttg |
5988 |
T |
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