View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_23 (Length: 312)
Name: NF20082_low_23
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 8455648 - 8455912
Alignment:
| Q |
13 |
aatatttaaagtacctgttagcatttttcttaaatttaaaggaaagacagtgaaaaatgttttttacaaatctttcccttattgtgggagtggttatttt |
112 |
Q |
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| T |
8455648 |
aatatttaaagtacttgttagtatttttcttaaatttaaaggaaagacagtgaaaaatgttttttacaaatctttcccttattgtgggagtggttatttt |
8455747 |
T |
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| Q |
113 |
gaagcatacatgactcttttttatgttacctgttgatctaatttaattgagtgaaatttnnnnnnnnnnntattaaagagtgttctagagaattggtcat |
212 |
Q |
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| T |
8455748 |
gaagcatgcatgactcttttttatgttacttgttgatctaatttaattgagtgaaattt--aaaaaaaaatattaaagagtgttctagagaattggt--- |
8455842 |
T |
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| Q |
213 |
ttgaataaaagaagccaggtgtaatttgaaaatagacacgatttgaaaagagacaaaaatgagaagtaactatagggcgctt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8455843 |
------------agccaggtgtaatttgaaaatagacacgatttgaaaagagacaaaaatgagaagtaactatcgggcgctt |
8455912 |
T |
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