View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_25 (Length: 310)
Name: NF20082_low_25
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 44235853 - 44235569
Alignment:
| Q |
11 |
tctcttgacagattgtgtgccaccatcctccccgaacagagaatcaggcacggccctagaaagatcatcatccggttctaactgttttgaaccaactacc |
110 |
Q |
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| T |
44235853 |
tctcttgacagattgtgtgccaccatcctccccgaacagagaatcaggcacagccctagcaggatcatcatccagttctaactgttttgaaccaactacc |
44235754 |
T |
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| Q |
111 |
tcctgagaatttgccttatagtcaatctcactactaccaagcttgtataatcgactaagttgtgatcttctttccctcaaaagcaccaaatctttctgaa |
210 |
Q |
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| T |
44235753 |
tcctgagaattcgccttatagtcaatctcactactaccaagcttgtataatcgactaagttgtgatcttctttccctcaaaagcaccaaatctttctgaa |
44235654 |
T |
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| Q |
211 |
agtttccctcatcatccctcaatctaggaaacaatggtcctaacaccgtatccggaatcttttgtcgaacttggctagtagtaac |
295 |
Q |
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| T |
44235653 |
agtttccctcatcatccctcaatctaggaaacaatggtcctaacaccgtatccggaatcttttgtcgaacttggccagtagtaac |
44235569 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 39395024 - 39394950
Alignment:
| Q |
176 |
tcttctttccctcaaaagcaccaaatctttctgaaagtttccctcatcatccctcaatctaggaaacaatggtcc |
250 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||| | |||||| || |||||||||||||| |||| |
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| T |
39395024 |
tcttctttccttcaaaagcaccaaatctttctgaaaatttacagaatcatctcttgatctaggaaacaatcgtcc |
39394950 |
T |
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