View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_26 (Length: 307)
Name: NF20082_low_26
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_26 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 969 - 841
Alignment:
| Q |
162 |
tagttgatatattgataggaaatatttcatatgtcttatcaattgtnnnnnnngcatatggccaacattagcaagaataatgatttatgtggataaaaaa |
261 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
969 |
tagttgatatattgataggaaatatttcatatttcttatcaattgtaaaaaaagcatatggccaacattagcaagaataatgatttatgtagataaaaaa |
870 |
T |
|
| Q |
262 |
tgaactgttaagcagaaaatagaaaataa |
290 |
Q |
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|||||||||||||| |||||||||||||| |
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| T |
869 |
tgaactgttaagcaaaaaatagaaaataa |
841 |
T |
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Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 4649952 - 4649824
Alignment:
| Q |
162 |
tagttgatatattgataggaaatatttcatatgtcttatcaattgtnnnnnnngcatatggccaacattagcaagaataatgatttatgtggataaaaaa |
261 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4649952 |
tagttgatatattgataggaaatatttcatatttcttatcaattgtaaaaaaagcatatggccaacattagcaagaataatgatttatgtagataaaaaa |
4649853 |
T |
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| Q |
262 |
tgaactgttaagcagaaaatagaaaataa |
290 |
Q |
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|||||||||||||| |||||||||||||| |
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| T |
4649852 |
tgaactgttaagcaaaaaatagaaaataa |
4649824 |
T |
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