View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_31 (Length: 264)
Name: NF20082_low_31
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_31 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 23349002 - 23348756
Alignment:
| Q |
1 |
aactaactgctgcaaaatcagttgcaaacatatctttttcttgaaattttcattgttttattcatctatatttccatctttttgtctcagactctggaga |
100 |
Q |
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| T |
23349002 |
aactaactgctgcaaaatcagttgcaaacatatctttttcttgaaattttcattgttttattcatctatatttccatctttttgtctcagactctggaga |
23348903 |
T |
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| Q |
101 |
agatcaagaaaagaaattctcaatctcatttaggtattctgaactgaaattcatatatagatagatatatacttagcaattattaatttatgatttttct |
200 |
Q |
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| T |
23348902 |
agatcaagaaaagaaattctcaatctcatttaggtattctgaactgaaattcatatatagatagatatatacttagcaattattaatttatgatttttct |
23348803 |
T |
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| Q |
201 |
gttttgaaattttattgtgtgtagcacaagtggttattaaggaactttg |
249 |
Q |
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| T |
23348802 |
gttttgaaattttatt--gtgtagcacaagtggttattaaggaactttg |
23348756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 39636409 - 39636296
Alignment:
| Q |
24 |
gcaaacatatctttttcttgaaattttcattgttttattcatctatatttccatctttttgtctcagactctggagaagatcaagaaaagaaattctcaa |
123 |
Q |
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|||| ||||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| |
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| T |
39636409 |
gcaaccatatatttttcttgaagtatacattgttttattcatctatatttccatctttttgtctcagaatcttgagaagatcaagaaaagaaattatcaa |
39636310 |
T |
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| Q |
124 |
tctcatttaggtat |
137 |
Q |
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| T |
39636309 |
tctcatttaggtat |
39636296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 39636274 - 39636163
Alignment:
| Q |
135 |
tattctgaactgaaattcatatatagatagatatatacttagcaattattaatttatgatttttctgttttgaaattttattgtgtgtagcacaagtggt |
234 |
Q |
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|||||||| |||||||| |||||| |||||||| ||||||||||| ||||| || | |||||||||||||||||||||| |||||||||||||||| |
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| T |
39636274 |
tattctgagctgaaatttatatattgatagata----cttagcaattaataattcatcacttttctgttttgaaattttatttagtgtagcacaagtggt |
39636179 |
T |
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| Q |
235 |
tattaaggaactttgt |
250 |
Q |
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| T |
39636178 |
gatcaaggaactttgt |
39636163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 160049 - 160093
Alignment:
| Q |
203 |
tttgaaattttattgtgtgtagcacaagtggttattaaggaactttg |
249 |
Q |
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| T |
160049 |
tttgaaattttattgtg--tagcacaagtggtgattaaggaactttg |
160093 |
T |
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