View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20082_low_5 (Length: 525)
Name: NF20082_low_5
Description: NF20082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20082_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 229 - 478
Target Start/End: Complemental strand, 40260424 - 40260175
Alignment:
| Q |
229 |
tcgtcaaaggttttcacaagcaagagacatgaatccactaaatgaccatcgatacacacaactccatgttaggagcaccaatacaacttaccttaccata |
328 |
Q |
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| T |
40260424 |
tcgtcaaaggttttcacaagcaagagacatgaatccactaaatgaccatcgatacacacaactccatgttaggagcaccaatacaacttaccttaccaca |
40260325 |
T |
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| Q |
329 |
tttgagagatttgaatgtgatagttaagtctcacattgatttaaacgagttaaatattgaacacataaaagagacaattcatatactcaaaaccttaaat |
428 |
Q |
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| T |
40260324 |
tatgagagatttgagtgtgatagttaagtctcaaattgatttaaacgagttaaatgttgaacatataagagagacaattcatatactcaaaaccttaaat |
40260225 |
T |
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| Q |
429 |
ttttagatcggatgtaattttaataaagtttaacttattgttcttctcaa |
478 |
Q |
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| T |
40260224 |
ttttagataggatgtagttttaataaagtttaactcattgttcttctcaa |
40260175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 40260610 - 40260429
Alignment:
| Q |
18 |
tgatcatatgaatttgtttctgtttatagatgtcattcggccgtgaaatgtgaaaaattggactgtgtatggtgccatgagaagccatgaagtagtagaa |
117 |
Q |
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| T |
40260610 |
tgatcatatgaatttgtttctgtttgtagatgtcattcagccgtgaaatgtgaaaaattggactgtgtatggtgccatgagaagccatgaagtagtagaa |
40260511 |
T |
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| Q |
118 |
agacgcacacacnnnnnnnnntcttcgagaaattctactaattgtttttacaaactgggtctctatatctaaacaaaatgtcta |
201 |
Q |
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| T |
40260510 |
agacgcacaca-aaaaaaaaatctttgagaaa-tctactaattgtttttacaaactgggtctctatacctaaacaaaatgtcta |
40260429 |
T |
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